Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq260 172 1e-40 seq336 102 2e-19 >seq260 Length=66046 Score = 172 bits (190), Expect = 1e-40 Identities = 309/435 (71%), Gaps = 36/435 (8%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| |||| | ||||||||| |||||||||| ||| || || ||| | Sbjct 25262 CCACAACTCAT-CCGCCGA-TTTTTCAACATCGGTCGGTTCGGACCTTCACTTGGTA-TC 25206 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTAT------TT 122 |||||| ||||| |||| ||| || |||||| ||||| || |||||||| | Sbjct 25205 ACCCAAG-TTTCATCCTGGTCAT-GGTTAGATCACCCGGGTT-CGGGTCTAGAAAAAATG 25149 Query 123 CCCA----GCGACTA-----------GA-CGCCCTAGTAAGACTCGCTTTTCGCTACGCC 166 | | | | || || ||||||| | ||||||||||| ||||| | | Sbjct 25148 ACTAAATTGTAAATATTAAAATATTTGATCGCCCTATTCAGACTCGCTTT-CGCTAAGGC 25090 Query 167 TCCCCTATTCGG--TTAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAG 224 | | ||| |||| | |||||| |||||||| | | |||| | ||| || Sbjct 25089 TTCGGAATTTTTCCTTAACCAC-GCCACTTTTTCTAAGTCGCCGGCTCATTCTTCAACAG 25031 Query 225 GTACGCAGTCACCCAACAAAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCT 284 | |||| |||| | ||| ||||||||| |||| ||||| | ||||| | ||| Sbjct 25030 GCACGCGGTCAGTTTAAAAAAAAC-CTCCCACTGTTTGTCAGCATAGGATTTCATGTTCT 24972 Query 285 ATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCG 344 ||||||||||||| || |||||||||||| ||||||||||||||||||| |||||||||| Sbjct 24971 ATTTCACTCCCCT-TCAGGGGTTCTTTTCACCTTTCCCTCACGGTACTATTTCACTATCG 24913 Query 345 GTCAGTCAGTAGTATTTAGCCTT-GGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTC 403 |||| || ||||||||||||| |||| |||||| | | ||||| || |||||| Sbjct 24912 GTCATCTAGGAGTATTTAGCCTTACGAGG-TGGTCCTCGCTGATTCACACGGGATTTCTC 24854 Query 404 GTGCTCCGTCCTACT 418 ||| |||| ||||| Sbjct 24853 GTGTCCCGTGCTACT 24839 >seq336 Length=57273 Score = 102 bits (112), Expect = 2e-19 Identities = 124/164 (76%), Gaps = 20/164 (12%) Strand=Plus/Plus Query 257 TGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCC 316 |||||||| ||| | ||||||| || ||||||||| ||| ||||| || Sbjct 2841 TGCTTGTATACATCCAGTTTCAGTATTTATTTCACT----TCT---------TTTTCACC 2887 Query 317 TTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGT-AGTATTTAGCCTTGGAGGATG 375 |||||||||||||||||||||||||||| ||| ||| ||| |||| ||| |||| || Sbjct 2888 TTTCCCTCACGGTACTAGTTCACTATCGATCA-AGAGTGCGTACTTAGGCTTAGAGGGTG 2946 Query 376 GTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||||||| || |||| || |||||| || || ||| |||||| Sbjct 2947 GTCCCCCTATTTTCAAAC-AAGTTT---GTTCT-CGTTCTACTC 2985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241595356416