Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq260 214 4e-53 seq336 138 2e-30 >seq260 Length=66046 Score = 214 bits (236), Expect = 4e-53 Identities = 237/313 (76%), Gaps = 16/313 (5%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || || |||||||||||||||||| Sbjct 22975 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCTCACTGCTGCCTCCCGTAG 22916 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| | ||||| ||| Sbjct 22915 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGAACAGCTACTGAT 22856 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | | | |||||| || ||| | ||||||||| |||||| | ||| ||||||||| | Sbjct 22855 CATTGCCTTGGTATGCCTTTACCACACCAACTAGCTAATCAGGCGCAAGCCCATCTCTTG 22796 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCATCCTCTGACATTATGCGGTATTAGCGTTC 240 || ||| || || | | | ||| | || ||| ||||||||| || Sbjct 22795 GC----AATTTT---------CATTTTTCACTTCTCAG-CAATATAAGGTATTAGCTATC 22750 Query 241 GTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCGC 300 |||||||| ||| | || || ||||| ||||| || ||||||||||||||||||||| Sbjct 22749 GTTTCCAATAGTTGTCCCTTTCCAAAAGGTAGGTT-CTTACGTGTTACTCACCCGTCCGC 22691 Query 301 CACTAAGCTATAT 313 |||| || ||||| Sbjct 22690 CACTCAG-TATAT 22679 >seq336 Length=57273 Score = 138 bits (152), Expect = 2e-30 Identities = 142/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||||| || | |||||||| |||||| ||||||||||| | | | | | | Sbjct 49933 GCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGTTACTCTAAAGTATTT 49874 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 |||||||||||||||||||||||||| | ||| |||||| || |||| |||| | || Sbjct 49873 GGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAAGATCTTTGG 49814 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCAGCGATA 186 |||||| || ||| || ||||||||||||||| ||| ||| ||||| | | ||| Sbjct 49813 CTTGGTAAGCCTTTACCTTACCAACTACCTAATCTTACGCAAGCTCATCTCTTAACGAAT 49754 Query 187 AATCTT 192 ||| || Sbjct 49753 AATATT 49748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998396265984