Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq260 203 8e-50 seq336 93.3 1e-16 >seq260 Length=66046 Score = 203 bits (224), Expect = 8e-50 Identities = 163/193 (84%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTG-ACC 265 ||||||||||||| ||||| ||||| |||| |||||| ||||||| || | || | ||| Sbjct 25653 CCACAGCTTCGGCAGATAA-TTAAGTCCCG-TACATTTTCGGCGCAAAAACGCTAGTACC 25596 Query 266 AGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| | Sbjct 25595 AGTGAGCTATTACGCACTCTTTAAAGGATGGCTGCTTCTAAGCCAACCTCCTGGTTGTGT 25536 Query 326 ACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGG 385 ||| | ||| |||||| |||| | |||| || ||||||||||||| || ||||| Sbjct 25535 TTGCATTTTCACCTCCTTTGTCACTACATTACCATTTTGGGGCCTTAGCTGGTGGTCTGG 25476 Query 386 GCTGTTTCCCTCT 398 ||||||||||||| Sbjct 25475 GCTGTTTCCCTCT 25463 >seq336 Length=57273 Score = 93.3 bits (102), Expect = 1e-16 Identities = 104/139 (75%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 262 GACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTT 321 ||||||||||||| ||||| || || | |||||||||||| ||||| || | |||||| Sbjct 2202 GACCAGTGAGCTACTACGCTTTCATTATAAGATGGCTGCTTCTAAGCCTACTTGCTGGTT 2261 Query 322 GTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGAT 381 |||| || || |||||| ||||| | | | ||| || ||||||| ||| Sbjct 2262 GTCTGGGCTCAATAACCTCCTTTACCACTAAATATACGCTTTGGAACCTTAGCGTTCGAT 2321 Query 382 CTGGGCTGTTTCCCTCTCG 400 ||||||||||||||| ||| Sbjct 2322 CTGGGCTGTTTCCCTTTCG 2340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177595595776