Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq260 104 2e-20 seq336 89.7 4e-16 >seq260 Length=66046 Score = 104 bits (114), Expect = 2e-20 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| || ||| || | |||||| |||||||| Sbjct 23902 CGAGTTGCAGCCTGCAATCCGAACTGAGACCGGATTTTTGAGGTTAGCTTGTCCTCGCGG 23843 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | | || | || ||| |||||||| ||||||| |||| ||||||| ||| Sbjct 23842 GGTCGCTTCTCTTTGTTCCGGCCATTGTAGCACGTGTGTCGCCCAGGATATAAGGGGCAT 23783 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||||||||| ||||||||||||| ||||||| Sbjct 23782 GCTGACTTGACGTCATCCTCACCTTCCTCCGGCTTGTCAC 23743 >seq336 Length=57273 Score = 89.7 bits (98), Expect = 4e-16 Identities = 114/156 (73%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||| ||||||| |||||| | |||| || | ||| | | ||| ||||| ||| | Sbjct 50911 TCGAATTGCAGAAAACAATCTGTACTAAGACGAATTTTATAG-ATTTGCTCCGACTCTCA 50853 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || | | ||||| |||||||| || ||| ||||| |||||||||| || Sbjct 50852 TCATTGCATCTTTTTGTATTCGCCATTGTAACACACGTGTAGCCCAGCCCATAAGGGTCA 50793 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 |||||||||||||| ||||| ||||||||| |||| Sbjct 50792 TGAGGACTTGACGTAATCCCTTCCTTCCTCCAGTTT 50757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415998492780