Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq260 178 2e-42
seq336 91.5 2e-16
>seq260
Length=66046
Score = 178 bits (196), Expect = 2e-42
Identities = 216/293 (74%), Gaps = 6/293 (2%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
||| |||||||| ||||| || ||| | |||||| ||||||||| ||||||
Sbjct 23325 CCCTCGCTTTCGTCTCTCAGTGTTAGTATTGGCCCAGCAGAGTGCCTTCGCCTTTGGTGT 23266
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||||| ||||||||||||||||||||| ||| |||||||| ||||||| | ||
Sbjct 23265 TCCTCCCGATATCTACGCATTTCACCGCTCCACCGGGAATTCCCTCTGCCTCTACCAAAC 23206
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTAT---GGGTTGAGCCCATAGTTTTCACATCTG 177
|| || || ||||| || | | |||| ||||| ||||| | ||| |||
Sbjct 23205 TCTAGCTTAAAAGTTT---ATTCTGCCTATCTAGGGTTAAGCCCTAATCTTTGACAGAAT 23149
Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237
|||| | |||||| | |||||| |||||| | |||||||||||||||| |||
Sbjct 23148 ACTTTTTAAACAACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCT 23089
Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
|| ||||||||||||||||||| ||||||||| ||||||||||||| ||
Sbjct 23088 CTGTCTTACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATA 23036
>seq336
Length=57273
Score = 91.5 bits (100), Expect = 2e-16
Identities = 74/90 (82%), Gaps = 0/90 (0%)
Strand=Plus/Minus
Query 192 CTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGG 251
|||| | | |||||| |||||| | |||| |||||||| ||| | | |||||||||||||
Sbjct 50154 CTACGCACGCTTTACGCCCAATCATTCCGAATAACGCTCGCCCCTTTCGTATTACCGCGG 50095
Query 252 CTGCTGGCACGTAGTTAGCCGTGGCTTATT 281
||||||||||| | ||||||| | || |||
Sbjct 50094 CTGCTGGCACGAAATTAGCCGGGACTAATT 50065
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 828796997154
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |