Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq260 178 2e-42 seq336 91.5 2e-16 >seq260 Length=66046 Score = 178 bits (196), Expect = 2e-42 Identities = 216/293 (74%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||| |||||||| ||||| || ||| | |||||| ||||||||| |||||| Sbjct 23325 CCCTCGCTTTCGTCTCTCAGTGTTAGTATTGGCCCAGCAGAGTGCCTTCGCCTTTGGTGT 23266 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| ||||||||||||||||||||| ||| |||||||| ||||||| | || Sbjct 23265 TCCTCCCGATATCTACGCATTTCACCGCTCCACCGGGAATTCCCTCTGCCTCTACCAAAC 23206 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTAT---GGGTTGAGCCCATAGTTTTCACATCTG 177 || || || ||||| || | | |||| ||||| ||||| | ||| ||| Sbjct 23205 TCTAGCTTAAAAGTTT---ATTCTGCCTATCTAGGGTTAAGCCCTAATCTTTGACAGAAT 23149 Query 178 ACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCT 237 |||| | |||||| | |||||| |||||| | |||||||||||||||| ||| Sbjct 23148 ACTTTTTAAACAACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCT 23089 Query 238 ACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 || ||||||||||||||||||| ||||||||| ||||||||||||| || Sbjct 23088 CTGTCTTACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATA 23036 >seq336 Length=57273 Score = 91.5 bits (100), Expect = 2e-16 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 192 CTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACCGCGG 251 |||| | | |||||| |||||| | |||| |||||||| ||| | | ||||||||||||| Sbjct 50154 CTACGCACGCTTTACGCCCAATCATTCCGAATAACGCTCGCCCCTTTCGTATTACCGCGG 50095 Query 252 CTGCTGGCACGTAGTTAGCCGTGGCTTATT 281 ||||||||||| | ||||||| | || ||| Sbjct 50094 CTGCTGGCACGAAATTAGCCGGGACTAATT 50065 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828796997154