Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq260 253 3e-65 seq336 95.1 2e-17 >seq260 Length=66046 Score = 253 bits (280), Expect = 3e-65 Identities = 222/275 (81%), Gaps = 1/275 (0%) Strand=Plus/Minus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| | ||||| ||||||||| |||||| ||||| |||| || ||||| ||||| Sbjct 27288 GAGGTGAGCTTCCCACTTAGATGCTTTCAGCGGTTATCTTCTCCATACATAGCTACCCAG 27229 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | |||||| | ||||||| || |||||| ||| | ||| |||||||||||| Sbjct 27228 CGTTTCCTGTTGGCACAAGAACTGGTATACTAGAGGTATGTTCTTCCAGGTCCTCTCGTA 27169 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| ||| |||||||||| || ||||| || |||||| ||||||||||||||| Sbjct 27168 CTATGGAAGACTCCTCTCAATGCTCTAACGCCTACACCGGATATGGACCGAACTGTCTCA 27109 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||| Sbjct 27108 CGACGTTCTGAACCCAGCTCACGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGAC 27049 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| | |||||||| || || |||||||||||| Sbjct 27048 GTACTACCGCCCCAGGTTGCGATGAGCCGACATCG 27014 >seq336 Length=57273 Score = 95.1 bits (104), Expect = 2e-17 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||| | |||||| ||| ||| || ||||||| ||||||||||| ||||||| | || Sbjct 55453 CGACGTATTAAACCCAACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTCGAAC 55512 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || || |||| | |||||| |||||| |||||||| Sbjct 55513 CTTCTGCAGCTCGAGGATGTGACGAGTCGACATCG 55547 Score = 82.4 bits (90), Expect = 1e-13 Identities = 118/165 (72%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 16 GCTT-AGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGC 74 |||| |||||| |||||| || || ||| ||| ||||| | ||||||||| ||||| Sbjct 54801 GCTTGAGATGCTTTCAGCGGTTCTCTAGTCCGAACGTAGCTACTCAGCTATGCTATTGGC 54860 Query 75 AGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCC 134 | ||||||| | ||| ||||| | || | ||||||||||||||| ||| | ||| Sbjct 54861 ATAACAACTGATACACAAGAGGGTCGTGATTTCCGGTCCTCTCGTACAAAGAAATCGTCC 54920 Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTC 179 | ||| ||| ||| ||| | |||||| | |||||||| Sbjct 54921 TGTCAGTTTTTTTACACCCCAAAAAGATAGGATACATACTGTCTC 54965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780797171064