Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= AAMG01001962.1
Length=275
Score E
Sequences producing significant alignments: (Bits) Value
seq260 253 3e-65
seq336 95.1 2e-17
>seq260
Length=66046
Score = 253 bits (280), Expect = 3e-65
Identities = 222/275 (81%), Gaps = 1/275 (0%)
Strand=Plus/Minus
Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61
|||| | ||||| ||||||||| |||||| ||||| |||| || ||||| |||||
Sbjct 27288 GAGGTGAGCTTCCCACTTAGATGCTTTCAGCGGTTATCTTCTCCATACATAGCTACCCAG 27229
Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120
| | | | |||||| | ||||||| || |||||| ||| | ||| ||||||||||||
Sbjct 27228 CGTTTCCTGTTGGCACAAGAACTGGTATACTAGAGGTATGTTCTTCCAGGTCCTCTCGTA 27169
Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180
||| ||| |||||||||| || ||||| || |||||| |||||||||||||||
Sbjct 27168 CTATGGAAGACTCCTCTCAATGCTCTAACGCCTACACCGGATATGGACCGAACTGTCTCA 27109
Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240
|||||||||||||||||||| ||| || |||| |||||||||||||||||||||||||||
Sbjct 27108 CGACGTTCTGAACCCAGCTCACGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGAC 27049
Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
|||| | |||||||| || || ||||||||||||
Sbjct 27048 GTACTACCGCCCCAGGTTGCGATGAGCCGACATCG 27014
>seq336
Length=57273
Score = 95.1 bits (104), Expect = 2e-17
Identities = 78/95 (82%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240
|||||| | |||||| ||| ||| || ||||||| ||||||||||| ||||||| | ||
Sbjct 55453 CGACGTATTAAACCCAACTCACGTACCACTTTAATCGGCGAACAGCCGAACCCTTCGAAC 55512
Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275
|| || |||| | |||||| |||||| ||||||||
Sbjct 55513 CTTCTGCAGCTCGAGGATGTGACGAGTCGACATCG 55547
Score = 82.4 bits (90), Expect = 1e-13
Identities = 118/165 (72%), Gaps = 1/165 (1%)
Strand=Plus/Plus
Query 16 GCTT-AGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGC 74
|||| |||||| |||||| || || ||| ||| ||||| | ||||||||| |||||
Sbjct 54801 GCTTGAGATGCTTTCAGCGGTTCTCTAGTCCGAACGTAGCTACTCAGCTATGCTATTGGC 54860
Query 75 AGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCC 134
| ||||||| | ||| ||||| | || | ||||||||||||||| ||| | |||
Sbjct 54861 ATAACAACTGATACACAAGAGGGTCGTGATTTCCGGTCCTCTCGTACAAAGAAATCGTCC 54920
Query 135 TCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTC 179
| ||| ||| ||| ||| | |||||| | ||||||||
Sbjct 54921 TGTCAGTTTTTTTACACCCCAAAAAGATAGGATACATACTGTCTC 54965
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 780797171064
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |