Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq260 223 8e-56 seq336 145 2e-32 >seq260 Length=66046 Score = 223 bits (246), Expect = 8e-56 Identities = 164/191 (86%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||||| |||||||| || | |||||||||| ||| | |||||||| |||||||| Sbjct 23006 TTTACAACCCATAGGCCTTCATCCTTCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 22947 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||| |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 22946 GCGGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 22887 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| ||||||||||||| |||||| |||| | |||| ||| ||| ||||| | ||| Sbjct 22886 GGCTGATCATCCTCTCAGAACAGCTACTGATCATTGCCTTGGTATGCCTTTACCACACCA 22827 Query 185 ACTAGCTAATC 195 ||||||||||| Sbjct 22826 ACTAGCTAATC 22816 >seq336 Length=57273 Score = 145 bits (160), Expect = 2e-32 Identities = 137/175 (78%), Gaps = 0/175 (0%) Strand=Plus/Minus Query 21 CTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCAC 80 ||||| || || || | || |||| |||||||||||||||||||| ||||||||||||| Sbjct 49954 CTTCTACACTCATGCCGTATAGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCAC 49895 Query 81 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTC 140 ||||| | | | | | ||| |||||||||||| ||| |||||||| |||| ||||| Sbjct 49894 TGCTGTTACTCTAAAGTATTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTCTC 49835 Query 141 AGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 | |||||||| |||| | | || ||| ||| ||||| ||||||| |||||| Sbjct 49834 AAACCAGCTAAAGATCTTTGGCTTGGTAAGCCTTTACCTTACCAACTACCTAATC 49780 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222395428224