Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= AAMG01002175.1
Length=414
Score E
Sequences producing significant alignments: (Bits) Value
seq260 223 8e-56
seq336 145 2e-32
>seq260
Length=66046
Score = 223 bits (246), Expect = 8e-56
Identities = 164/191 (86%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64
|||||||||| |||||||| || | |||||||||| ||| | |||||||| ||||||||
Sbjct 23006 TTTACAACCCATAGGCCTTCATCCTTCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 22947
Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124
| | || ||||| |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 22946 GCGGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 22887
Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184
||||| ||||||||||||| |||||| |||| | |||| ||| ||| ||||| | |||
Sbjct 22886 GGCTGATCATCCTCTCAGAACAGCTACTGATCATTGCCTTGGTATGCCTTTACCACACCA 22827
Query 185 ACTAGCTAATC 195
|||||||||||
Sbjct 22826 ACTAGCTAATC 22816
>seq336
Length=57273
Score = 145 bits (160), Expect = 2e-32
Identities = 137/175 (78%), Gaps = 0/175 (0%)
Strand=Plus/Minus
Query 21 CTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCAC 80
||||| || || || | || |||| |||||||||||||||||||| |||||||||||||
Sbjct 49954 CTTCTACACTCATGCCGTATAGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCAC 49895
Query 81 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTC 140
||||| | | | | | ||| |||||||||||| ||| |||||||| |||| |||||
Sbjct 49894 TGCTGTTACTCTAAAGTATTTGGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTCTC 49835
Query 141 AGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195
| |||||||| |||| | | || ||| ||| ||||| ||||||| ||||||
Sbjct 49834 AAACCAGCTAAAGATCTTTGGCTTGGTAAGCCTTTACCTTACCAACTACCTAATC 49780
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1222395428224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |