Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq260 327 3e-87 seq336 150 5e-34 >seq260 Length=66046 Score = 327 bits (362), Expect = 3e-87 Identities = 274/333 (82%), Gaps = 2/333 (1%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||| ||||||||||||||||| ||||| ||| ||||||||| | |||||||||| | | Sbjct 22810 GCGCCTGATTAGCTAGTTGGTGTGGTAAAGGCATACCAAGGCAATGATCAGTAGCTGTTC 22869 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||| Sbjct 22870 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGC 22929 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||| ||||| || | |||||||| ||||||||| | ||||| ||||||||| |||||| Sbjct 22930 AGTGAGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGAAGGATGAA 22989 Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG-ATAATGACGGTACTTGAGGAGGAA 399 ||||| |||| ||||| ||| | |||| ||| || ||||||||| |||||| || Sbjct 22990 GGCCTATGGGTTGTAAACTTCTTTTCTCAGAAAAGAATTATGACGGTATCTGAGGAATAA 23049 Query 400 GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGA 459 || ||||||||| ||||||||||||||||||| || ||| || ||||||||||||| Sbjct 23050 GCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGA 23109 Query 460 ATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492 || | | |||||||||| || |||||| |||| Sbjct 23110 ATGA-TTGGGCGTAAAGCGTCTGTAGGTTGTTT 23141 >seq336 Length=57273 Score = 150 bits (166), Expect = 5e-34 Identities = 142/181 (78%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 |||| |||||| ||||||||||||||| ||||||||||| | | |||| |||| | Sbjct 49774 GCGTAAGATTAGGTAGTTGGTAAGGTAAAGGCTTACCAAGCCAAAGATCTTTAGCTGGTT 49833 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 |||||| ||||| |||||||||| |||||||||||| ||||| | | | | |||| Sbjct 49834 TGAGAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAATACTTTAGAGTAACAGC 49893 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||||||||||||| ||||||||| ||||||||| |||| | | || |||| | ||| Sbjct 49894 AGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCTATACGGCATGAGTGTAGAA 49953 Query 341 G 341 | Sbjct 49954 G 49954 Score = 107 bits (118), Expect = 6e-21 Identities = 81/94 (86%), Gaps = 1/94 (1%) Strand=Plus/Plus Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458 || ||||||||| | |||||||||||||||||||||||| | ||||| |||||||| ||| Sbjct 50069 AGTCCCGGCTAATTTCGTGCCAGCAGCCGCGGTAATACGAAAGGGGCGAGCGTTATTCGG 50128 Query 459 AATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492 ||| | | |||||||||| |||||||| | |||| Sbjct 50129 AATGA-TTGGGCGTAAAGCGTGCGTAGATTGTTT 50161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497594398976