Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= AAMG01002180.1
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
seq260 327 3e-87
seq336 150 5e-34
>seq260
Length=66046
Score = 327 bits (362), Expect = 3e-87
Identities = 274/333 (82%), Gaps = 2/333 (1%)
Strand=Plus/Plus
Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220
||| ||||||||||||||||| ||||| ||| ||||||||| | |||||||||| | |
Sbjct 22810 GCGCCTGATTAGCTAGTTGGTGTGGTAAAGGCATACCAAGGCAATGATCAGTAGCTGTTC 22869
Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280
||||||| ||||| |||||| ||| |||||||||||| ||| ||||||||||||||||||
Sbjct 22870 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGC 22929
Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340
|||| ||||| || | |||||||| ||||||||| | ||||| ||||||||| ||||||
Sbjct 22930 AGTGAGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGAAGGATGAA 22989
Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAG-ATAATGACGGTACTTGAGGAGGAA 399
||||| |||| ||||| ||| | |||| ||| || ||||||||| |||||| ||
Sbjct 22990 GGCCTATGGGTTGTAAACTTCTTTTCTCAGAAAAGAATTATGACGGTATCTGAGGAATAA 23049
Query 400 GCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGA 459
|| ||||||||| ||||||||||||||||||| || ||| || |||||||||||||
Sbjct 23050 GCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGA 23109
Query 460 ATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492
|| | | |||||||||| || |||||| ||||
Sbjct 23110 ATGA-TTGGGCGTAAAGCGTCTGTAGGTTGTTT 23141
>seq336
Length=57273
Score = 150 bits (166), Expect = 5e-34
Identities = 142/181 (78%), Gaps = 0/181 (0%)
Strand=Plus/Plus
Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220
|||| |||||| ||||||||||||||| ||||||||||| | | |||| |||| |
Sbjct 49774 GCGTAAGATTAGGTAGTTGGTAAGGTAAAGGCTTACCAAGCCAAAGATCTTTAGCTGGTT 49833
Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280
|||||| ||||| |||||||||| |||||||||||| ||||| | | | | ||||
Sbjct 49834 TGAGAGAATGATCAGCCACATTGGGACTGAGACACGGCCCAAATACTTTAGAGTAACAGC 49893
Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340
|||||||||||||| ||||||||| ||||||||| |||| | | || |||| | |||
Sbjct 49894 AGTGGGGAATATTGGACAATGGGCGCAAGCCTGATCCAGCTATACGGCATGAGTGTAGAA 49953
Query 341 G 341
|
Sbjct 49954 G 49954
Score = 107 bits (118), Expect = 6e-21
Identities = 81/94 (86%), Gaps = 1/94 (1%)
Strand=Plus/Plus
Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458
|| ||||||||| | |||||||||||||||||||||||| | ||||| |||||||| |||
Sbjct 50069 AGTCCCGGCTAATTTCGTGCCAGCAGCCGCGGTAATACGAAAGGGGCGAGCGTTATTCGG 50128
Query 459 AATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492
||| | | |||||||||| |||||||| | ||||
Sbjct 50129 AATGA-TTGGGCGTAAAGCGTGCGTAGATTGTTT 50161
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1497594398976
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |