Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= AAMG01002183.1
Length=408
Score E
Sequences producing significant alignments: (Bits) Value
seq260 259 1e-66
seq336 150 4e-34
>seq260
Length=66046
Score = 259 bits (286), Expect = 1e-66
Identities = 301/405 (74%), Gaps = 1/405 (0%)
Strand=Plus/Plus
Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64
|||||| |||| ||||||||| ||||||||||||||||||| || ||| || |||
Sbjct 23040 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 23099
Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124
|||||||||||| | ||||||||||| || |||||| |||| |||| || |||
Sbjct 23100 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTTGTTTAAAAAGTATTCTGTCAAA 23159
Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184
| || |||| ||||| | || ||||| |||||||| | || ||||
Sbjct 23160 GATTAGGGCTTAACCCTAGATAGGCAGAATAAACTTTTAAGCTAGAGTTTGGTAGAGGCA 23219
Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244
|||||||| ||| ||||||||||||||||||||| |||||||||||| ||||||
Sbjct 23220 GAGGGAATTCCCGGTGGAGCGGTGAAATGCGTAGATATCGGGAGGAACACCAAAGGCGAA 23279
Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304
||| |||||| | ||| |||||||| |||||||| |||||||||| |||||
Sbjct 23280 GGCACTCTGCTGGGCCAATACTAACACTGAGAGACGAAAGCGAGGGGAGCAAATGGGATT 23339
Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGG-GCGCATAAGTG 363
|||| ||| ||||||| |||||||||| ||| | ||||||||| ||| | | || |
Sbjct 23340 AGATTCCCCAGTAGTCCTCGCCGTAAACAATGGAAACTAGGTGTTGGGTGTATAAAAATC 23399
Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408
| | || || ||| |||||| ||||| | || |||||||||||
Sbjct 23400 ATTCAGTATCGTAGCTAACGCATTAAGTTTCCCGCCTGGGGAGTA 23444
>seq336
Length=57273
Score = 150 bits (166), Expect = 4e-34
Identities = 238/335 (71%), Gaps = 16/335 (5%)
Strand=Plus/Plus
Query 14 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 73
|| ||||||||| | |||||||||||||||||||||||| | ||||| |||||||| |||
Sbjct 50069 AGTCCCGGCTAATTTCGTGCCAGCAGCCGCGGTAATACGAAAGGGGCGAGCGTTATTCGG 50128
Query 74 AATTACTGGGCGTAAAGGGTGCGTAGGTGGTTT---CTTAAGTC-----AGAGGTGAAAG 125
||| | ||||||||||| |||||||| | |||| |||| || | || | ||
Sbjct 50129 AATGATTGGGCGTAAAGCGTGCGTAGATTGTTTTTACTTATTTCTATACACAGATATAAA 50188
Query 126 GCTATGGCTCA-ACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGC--AGGAGGGG 182
||| | | | || || | || | | || |||| | ||| |
Sbjct 50189 --TATCATTTATATTGATAGAAAATTTATATAAATAAAAA-CTTGAGTATTTATTAGGAG 50245
Query 183 CAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCG 242
||| |||||||| | |||| ||| |||| || ||| | |||||||| ||| |||
Sbjct 50246 --AGTAGAATTCCTGGAGTAGAGGTAAAATTTGTTGATCTCAGGAGGAATACCTAAAGCG 50303
Query 243 AAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGA 302
|| || ||| |||| ||| ||| |||||| |||||||||||| ||| || ||||
Sbjct 50304 AAAGCAGCTCTCTGGTAAAGCACTAACATTGAGGCACGAAAGCGTGGGTAGCGAAGAGGA 50363
Query 303 TTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337
||||||||||| |||||||||||||| ||| ||||
Sbjct 50364 TTAGATACCCTTGTAGTCCACGCCGTCAACTATGA 50398
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203195500032
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |