Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq260 259 1e-66 seq336 150 4e-34 >seq260 Length=66046 Score = 259 bits (286), Expect = 1e-66 Identities = 301/405 (74%), Gaps = 1/405 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 23040 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 23099 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||| |||| |||| || ||| Sbjct 23100 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTTGTTTAAAAAGTATTCTGTCAAA 23159 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | || |||| ||||| | || ||||| |||||||| | || |||| Sbjct 23160 GATTAGGGCTTAACCCTAGATAGGCAGAATAAACTTTTAAGCTAGAGTTTGGTAGAGGCA 23219 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||||| ||| ||||||||||||||||||||| |||||||||||| |||||| Sbjct 23220 GAGGGAATTCCCGGTGGAGCGGTGAAATGCGTAGATATCGGGAGGAACACCAAAGGCGAA 23279 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 ||| |||||| | ||| |||||||| |||||||| |||||||||| ||||| Sbjct 23280 GGCACTCTGCTGGGCCAATACTAACACTGAGAGACGAAAGCGAGGGGAGCAAATGGGATT 23339 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGG-GCGCATAAGTG 363 |||| ||| ||||||| |||||||||| ||| | ||||||||| ||| | | || | Sbjct 23340 AGATTCCCCAGTAGTCCTCGCCGTAAACAATGGAAACTAGGTGTTGGGTGTATAAAAATC 23399 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | || || ||| |||||| ||||| | || ||||||||||| Sbjct 23400 ATTCAGTATCGTAGCTAACGCATTAAGTTTCCCGCCTGGGGAGTA 23444 >seq336 Length=57273 Score = 150 bits (166), Expect = 4e-34 Identities = 238/335 (71%), Gaps = 16/335 (5%) Strand=Plus/Plus Query 14 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 73 || ||||||||| | |||||||||||||||||||||||| | ||||| |||||||| ||| Sbjct 50069 AGTCCCGGCTAATTTCGTGCCAGCAGCCGCGGTAATACGAAAGGGGCGAGCGTTATTCGG 50128 Query 74 AATTACTGGGCGTAAAGGGTGCGTAGGTGGTTT---CTTAAGTC-----AGAGGTGAAAG 125 ||| | ||||||||||| |||||||| | |||| |||| || | || | || Sbjct 50129 AATGATTGGGCGTAAAGCGTGCGTAGATTGTTTTTACTTATTTCTATACACAGATATAAA 50188 Query 126 GCTATGGCTCA-ACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGC--AGGAGGGG 182 ||| | | | || || | || | | || |||| | ||| | Sbjct 50189 --TATCATTTATATTGATAGAAAATTTATATAAATAAAAA-CTTGAGTATTTATTAGGAG 50245 Query 183 CAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCG 242 ||| |||||||| | |||| ||| |||| || ||| | |||||||| ||| ||| Sbjct 50246 --AGTAGAATTCCTGGAGTAGAGGTAAAATTTGTTGATCTCAGGAGGAATACCTAAAGCG 50303 Query 243 AAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGA 302 || || ||| |||| ||| ||| |||||| |||||||||||| ||| || |||| Sbjct 50304 AAAGCAGCTCTCTGGTAAAGCACTAACATTGAGGCACGAAAGCGTGGGTAGCGAAGAGGA 50363 Query 303 TTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 ||||||||||| |||||||||||||| ||| |||| Sbjct 50364 TTAGATACCCTTGTAGTCCACGCCGTCAACTATGA 50398 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203195500032