Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= AAMG01002193.1
Length=560
Score E
Sequences producing significant alignments: (Bits) Value
seq260 183 1e-43
seq336 104 8e-20
>seq260
Length=66046
Score = 183 bits (202), Expect = 1e-43
Identities = 353/511 (69%), Gaps = 21/511 (4%)
Strand=Plus/Plus
Query 33 TAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGG 92
|||||||||| || |||||||| ||||| |||||||||| | ||| | || ||
Sbjct 25158 TAGACCCGAACCCGGGTGATCTAACCATGACCAGGATGAAACTTGGGTGATACCAAGTGA 25217
Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152
||||||||||| || |||||||||||| | ||||||| ||||| ||| ||||||| |
Sbjct 25218 AGGTCCGAACCGACCGATGTTGAAAAATCGGCGGATGAGTTGTGGTTAGCGGTGAAATAC 25277
Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAG-----GTAGTGCCTCA 207
| | ||| ||| |||||||||||| |||||| || || | ||| | ||
Sbjct 25278 CAGTCGAACCCGGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTACATCT 25337
Query 208 AGTATCACCATCGGGGGTAGAGCACTGTTATGGCTAGGG-GGTCATTGCGACTTACCAAA 266
||| | | | |||||| ||||||||| || ||| || | || |||||||
Sbjct 25338 AGTCTATCTA---GGGGTAAAGCACTGTTTCGGTGCGGGCTGTGAAAACG--GTACCAAA 25392
Query 267 CCATTGCAAACTCCGAATGCGCATCAGTTTTACCGCG--GGAGTGAGGGCATGGGTGCTA 324
| | |||||||| |||| | | | || | | | |||||| |||| | ||
Sbjct 25393 TCGTGGCAAACTCTGAATAC---TAGAAATGACGGTGTAGTAGTGAGACTGTGGGGGATA 25449
Query 325 AGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCT 384
|| ||| | | ||||| || | || ||| | ||||||||||||| ||||| |
Sbjct 25450 AGCTCCATTGTCAAGAGGGAAACAGCCCAGACCACCAGCTAAGGCCCCAAAATGGTAATG 25509
Query 385 AAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCA 444
||| || || || || | ||| || ||| | |||| |||||||| ||||||||||
Sbjct 25510 TAGT--GACAAAGGAGGTGAAAATGCAAACACAACCAGGAGGTTGGCTTAGAAGCAGCCA 25567
Query 445 TTCATTTAAAGAGTGCGTAACAGCTCACTAGT-CGAGGAGTCGGGCGTGGATAATAATCG 503
|| |||||||||||||||| |||||||| || | || | ||| || ||| ||
Sbjct 25568 -TCCTTTAAAGAGTGCGTAATAGCTCACTGGTACTAGCGTTTTTGCGCCGAAAATGTACG 25626
Query 504 GGTATTAAGTTGTCTACCGAAGCAGTGGGAT 534
|| |||| || ||| ||||||| |||||||
Sbjct 25627 GGACTTAA-TTATCTGCCGAAGCTGTGGGAT 25656
>seq336
Length=57273
Score = 104 bits (114), Expect = 8e-20
Identities = 122/165 (74%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94
||||||||||| ||||||||| |||| |||| |||| | ||||||| |||||
Sbjct 2643 GACCCGAAACCGAGTGATCTAGTCATGAACAGGTTGAAAAAATGCTAACACGTTTTGGAG 2584
Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154
| ||||| ||| ||| | || | || |||| |||| ||||||||||| || |
Sbjct 2583 GACCGAATTCACGTCTGTGGCAATAGACGGAAATGATTTGTGACTAGGGGTGAAAAGCCA 2524
Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTA 199
| | |||| ||| |||||||||| ||| ||||| ||||||||||
Sbjct 2523 ATCGAACTCGGAGATAGCTGGTTTTCTGCGAAATTTATTTAGGTA 2479
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1689593680896
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |