Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq260 183 1e-43 seq336 104 8e-20 >seq260 Length=66046 Score = 183 bits (202), Expect = 1e-43 Identities = 353/511 (69%), Gaps = 21/511 (4%) Strand=Plus/Plus Query 33 TAGACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGG 92 |||||||||| || |||||||| ||||| |||||||||| | ||| | || || Sbjct 25158 TAGACCCGAACCCGGGTGATCTAACCATGACCAGGATGAAACTTGGGTGATACCAAGTGA 25217 Query 93 AGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGC 152 ||||||||||| || |||||||||||| | ||||||| ||||| ||| ||||||| | Sbjct 25218 AGGTCCGAACCGACCGATGTTGAAAAATCGGCGGATGAGTTGTGGTTAGCGGTGAAATAC 25277 Query 153 TAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAG-----GTAGTGCCTCA 207 | | ||| ||| |||||||||||| |||||| || || | ||| | || Sbjct 25278 CAGTCGAACCCGGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTACATCT 25337 Query 208 AGTATCACCATCGGGGGTAGAGCACTGTTATGGCTAGGG-GGTCATTGCGACTTACCAAA 266 ||| | | | |||||| ||||||||| || ||| || | || ||||||| Sbjct 25338 AGTCTATCTA---GGGGTAAAGCACTGTTTCGGTGCGGGCTGTGAAAACG--GTACCAAA 25392 Query 267 CCATTGCAAACTCCGAATGCGCATCAGTTTTACCGCG--GGAGTGAGGGCATGGGTGCTA 324 | | |||||||| |||| | | | || | | | |||||| |||| | || Sbjct 25393 TCGTGGCAAACTCTGAATAC---TAGAAATGACGGTGTAGTAGTGAGACTGTGGGGGATA 25449 Query 325 AGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACAGCT 384 || ||| | | ||||| || | || ||| | ||||||||||||| ||||| | Sbjct 25450 AGCTCCATTGTCAAGAGGGAAACAGCCCAGACCACCAGCTAAGGCCCCAAAATGGTAATG 25509 Query 385 AAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGATGTTGGCTTGGAAGCAGCCA 444 ||| || || || || | ||| || ||| | |||| |||||||| |||||||||| Sbjct 25510 TAGT--GACAAAGGAGGTGAAAATGCAAACACAACCAGGAGGTTGGCTTAGAAGCAGCCA 25567 Query 445 TTCATTTAAAGAGTGCGTAACAGCTCACTAGT-CGAGGAGTCGGGCGTGGATAATAATCG 503 || |||||||||||||||| |||||||| || | || | ||| || ||| || Sbjct 25568 -TCCTTTAAAGAGTGCGTAATAGCTCACTGGTACTAGCGTTTTTGCGCCGAAAATGTACG 25626 Query 504 GGTATTAAGTTGTCTACCGAAGCAGTGGGAT 534 || |||| || ||| ||||||| ||||||| Sbjct 25627 GGACTTAA-TTATCTGCCGAAGCTGTGGGAT 25656 >seq336 Length=57273 Score = 104 bits (114), Expect = 8e-20 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 ||||||||||| ||||||||| |||| |||| |||| | ||||||| ||||| Sbjct 2643 GACCCGAAACCGAGTGATCTAGTCATGAACAGGTTGAAAAAATGCTAACACGTTTTGGAG 2584 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 | ||||| ||| ||| | || | || |||| |||| ||||||||||| || | Sbjct 2583 GACCGAATTCACGTCTGTGGCAATAGACGGAAATGATTTGTGACTAGGGGTGAAAAGCCA 2524 Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTA 199 | | |||| ||| |||||||||| ||| ||||| |||||||||| Sbjct 2523 ATCGAACTCGGAGATAGCTGGTTTTCTGCGAAATTTATTTAGGTA 2479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689593680896