Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq260 120 6e-25 seq336 75.2 2e-11 >seq260 Length=66046 Score = 120 bits (132), Expect = 6e-25 Identities = 175/243 (72%), Gaps = 11/243 (5%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 || |||| ||| ||| || || ||| ||||| ||| ||| | ||||| || |||| Sbjct 24441 GGCGGATACCTAGGCATCTAGAGACGAAGAAGGGCGTGGTACCGA-CGATACACTTCGGG 24499 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 |||| | ||||| | |||||||| ||||| |||||| ||| |||| ||| | Sbjct 24500 GAGTTGG-AAACAAGCATTGATCCGAAGATTCCCGAATAGGGCAACC------TTTTATT 24552 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 | || |||||||| |||| | | || || ||| | | |||||||||||||| | | Sbjct 24553 CTTTT--TGCTGAATTCATAAGCAAAAAAGAGACAACTCAGTGAACTGAAACATCTTATT 24610 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 | ||| ||||||| ||| ||| || |||| || ||||||||||||||||| || | || Sbjct 24611 AACTGAAGGAAAATAAAGCAAACGCGATTTCCCGAGTAGTGGCGAGCGAAAAGGAAACAG 24670 Query 249 CCT 251 ||| Sbjct 24671 CCT 24673 >seq336 Length=57273 Score = 75.2 bits (82), Expect = 2e-11 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 171 GAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGG 230 ||| |||||||||| |||| || ||||||| ||||||||||||| ||| |||||||| Sbjct 3306 GAATTGAAACATCTTAGTAACTAGAGGAAAAAAAATCAACCGAGACTCCGTTAGTAGTGG 3247 Query 231 CGAGCGAAA 239 |||||||| Sbjct 3246 TGAGCGAAA 3238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918396565184