Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= AAMG01002194.1
Length=319
Score E
Sequences producing significant alignments: (Bits) Value
seq260 120 6e-25
seq336 75.2 2e-11
>seq260
Length=66046
Score = 120 bits (132), Expect = 6e-25
Identities = 175/243 (72%), Gaps = 11/243 (5%)
Strand=Plus/Plus
Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69
|| |||| ||| ||| || || ||| ||||| ||| ||| | ||||| || ||||
Sbjct 24441 GGCGGATACCTAGGCATCTAGAGACGAAGAAGGGCGTGGTACCGA-CGATACACTTCGGG 24499
Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129
|||| | ||||| | |||||||| ||||| |||||| ||| |||| ||| |
Sbjct 24500 GAGTTGG-AAACAAGCATTGATCCGAAGATTCCCGAATAGGGCAACC------TTTTATT 24552
Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188
| || |||||||| |||| | | || || ||| | | |||||||||||||| | |
Sbjct 24553 CTTTT--TGCTGAATTCATAAGCAAAAAAGAGACAACTCAGTGAACTGAAACATCTTATT 24610
Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248
| ||| ||||||| ||| ||| || |||| || ||||||||||||||||| || | ||
Sbjct 24611 AACTGAAGGAAAATAAAGCAAACGCGATTTCCCGAGTAGTGGCGAGCGAAAAGGAAACAG 24670
Query 249 CCT 251
|||
Sbjct 24671 CCT 24673
>seq336
Length=57273
Score = 75.2 bits (82), Expect = 2e-11
Identities = 58/69 (84%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 171 GAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGG 230
||| |||||||||| |||| || ||||||| ||||||||||||| ||| ||||||||
Sbjct 3306 GAATTGAAACATCTTAGTAACTAGAGGAAAAAAAATCAACCGAGACTCCGTTAGTAGTGG 3247
Query 231 CGAGCGAAA 239
||||||||
Sbjct 3246 TGAGCGAAA 3238
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 918396565184
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |