Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= AAMG01002207.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
seq260 168 2e-39
seq336 82.4 3e-13
>seq260
Length=66046
Score = 168 bits (186), Expect = 2e-39
Identities = 335/487 (69%), Gaps = 17/487 (3%)
Strand=Plus/Minus
Query 3 GACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAA 62
|||||||| |||| ||||||||||||||| ||| ||| |||| | |||||| ||
Sbjct 26877 GACTTGTAGGTCTTACAGTCAAGCTCCCTTCTGCCTTTATACTCTACGGCTGATTTCCGT 26818
Query 63 CCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTT 122
|||| |||| |||||||||| | ||| ||||| |||| ||| | ||||||||||
Sbjct 26817 CCAGCCTGAAGGAACCTTTGCACATCTCTGTTACCTTTTAAGAGATGA-CCGCCCCAGTC 26759
Query 123 AAACTACCCACCAGGCACTGTCCCCAACCCAGAT-CATGG---GCCAAGGTTAGATATCC 178
||||| |||||| | |||||| || | | || || |||| ||||| ||
Sbjct 26758 AAACTGCCCACCTGAAACTGTCAAGCGTCCTGCTTCAAGGAACGCCA---TTAGAATTCT 26702
Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAA---CCACTAGCGTGGCCGCATC 235
| ||||||||| | ||| | ||||| ||| || |||
Sbjct 26701 AGCTTTTCCAGAGTGGTCTCTCACTGTTGGCTCCAATTTTCCCAAAAGAAAATT---ATC 26645
Query 236 ATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAG 295
| | |||||||||| || | |||| ||| || |||| || |||| ||| |||
Sbjct 26644 AACGCCTCCCACCTAGTCTGCGCAAAAAAAACCCAAATTCAATTTCAGGCTACAGTCAAG 26585
Query 296 GTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTT 354
| | |||||||| |||| | || | | ||||||| || | | ||||
Sbjct 26584 CTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTT 26525
Query 355 CACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAAC 413
||||| | || | |||||||| | || |||||||||| ||||||| |||||| ||
Sbjct 26524 CACCGAGTCTCTCTCCGAGACAGC-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGGAC 26466
Query 414 TTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGG 473
||| ||||||||||||||||||||||||||| ||||||||||| |||||||| || ||
Sbjct 26465 TTATCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGG 26406
Query 474 GGCTTCA 480
|||||||
Sbjct 26405 GGCTTCA 26399
>seq336
Length=57273
Score = 82.4 bits (90), Expect = 3e-13
Identities = 81/105 (77%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 331 GCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTT 390
||||||| || | | ||||||||| | | | | | |||||||| | | | |||||
Sbjct 292 GCATCTTCACGGAGAATTCAATTTCACTGAGACCATATTAGAGACAGCGGAGTAATCGTT 351
Query 391 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 435
|| |||||| |||||| ||||||||||||| ||| ||||||||||
Sbjct 352 ACACCATTCATGCAGGCCGGAACTTACCCGGCAATGAATTTCGCT 396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1702393633024
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |