Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq260 168 2e-39 seq336 82.4 3e-13 >seq260 Length=66046 Score = 168 bits (186), Expect = 2e-39 Identities = 335/487 (69%), Gaps = 17/487 (3%) Strand=Plus/Minus Query 3 GACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAA 62 |||||||| |||| ||||||||||||||| ||| ||| |||| | |||||| || Sbjct 26877 GACTTGTAGGTCTTACAGTCAAGCTCCCTTCTGCCTTTATACTCTACGGCTGATTTCCGT 26818 Query 63 CCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTT 122 |||| |||| |||||||||| | ||| ||||| |||| ||| | |||||||||| Sbjct 26817 CCAGCCTGAAGGAACCTTTGCACATCTCTGTTACCTTTTAAGAGATGA-CCGCCCCAGTC 26759 Query 123 AAACTACCCACCAGGCACTGTCCCCAACCCAGAT-CATGG---GCCAAGGTTAGATATCC 178 ||||| |||||| | |||||| || | | || || |||| ||||| || Sbjct 26758 AAACTGCCCACCTGAAACTGTCAAGCGTCCTGCTTCAAGGAACGCCA---TTAGAATTCT 26702 Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAA---CCACTAGCGTGGCCGCATC 235 | ||||||||| | ||| | ||||| ||| || ||| Sbjct 26701 AGCTTTTCCAGAGTGGTCTCTCACTGTTGGCTCCAATTTTCCCAAAAGAAAATT---ATC 26645 Query 236 ATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAG 295 | | |||||||||| || | |||| ||| || |||| || |||| ||| ||| Sbjct 26644 AACGCCTCCCACCTAGTCTGCGCAAAAAAAACCCAAATTCAATTTCAGGCTACAGTCAAG 26585 Query 296 GTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTT 354 | | |||||||| |||| | || | | ||||||| || | | |||| Sbjct 26584 CTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTT 26525 Query 355 CACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAAC 413 ||||| | || | |||||||| | || |||||||||| ||||||| |||||| || Sbjct 26524 CACCGAGTCTCTCTCCGAGACAGC-GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGGAC 26466 Query 414 TTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGG 473 ||| ||||||||||||||||||||||||||| ||||||||||| |||||||| || || Sbjct 26465 TTATCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTCACCGG 26406 Query 474 GGCTTCA 480 ||||||| Sbjct 26405 GGCTTCA 26399 >seq336 Length=57273 Score = 82.4 bits (90), Expect = 3e-13 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 331 GCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTT 390 ||||||| || | | ||||||||| | | | | | |||||||| | | | ||||| Sbjct 292 GCATCTTCACGGAGAATTCAATTTCACTGAGACCATATTAGAGACAGCGGAGTAATCGTT 351 Query 391 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCT 435 || |||||| |||||| ||||||||||||| ||| |||||||||| Sbjct 352 ACACCATTCATGCAGGCCGGAACTTACCCGGCAATGAATTTCGCT 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702393633024