Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq260 179 8e-43
seq336 98.7 2e-18
>seq260
Length=66046
Score = 179 bits (198), Expect = 8e-43
Identities = 216/295 (73%), Gaps = 19/295 (6%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60
|||||||||||| |||||||||||||||||||| | || ||| || | |
Sbjct 23076 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCATAATTC------- 23024
Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120
|||| || | ||||||||||||||| || ||| ||||||||||||||||
Sbjct 23023 ------TTTT-----CTGAGAAAAGAAGTTTACAACCCATAGG-CCTTCATCCTTCACGC 22976
Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180
| | ||| |||| || ||| |||||| || ||||||||||||||||||||||||
Sbjct 22975 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCTCACTGCTGCCTCCCGTAG 22916
Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240
|||| ||| |||||||||||| ||| ||||| || | |||||||||||| ||| ||
Sbjct 22915 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGAACAGCTACTGAT 22856
Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295
| | | || ||| ||| ||||| | || |||| ||||| |||| ||||||
Sbjct 22855 CATTGCCTTGGTATGCCTTTACCACACCAACTAGCTAATCAGGCGCAAGCCCATC 22801
>seq336
Length=57273
Score = 98.7 bits (108), Expect = 2e-18
Identities = 123/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 127 GCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186
||||| |||| || || |||||| |||||||||| |||||||| | | | | |||
Sbjct 49933 GCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGTTACTCTAAAGTATTT 49874
Query 187 GGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGG 246
|| |||||||||||| ||||||||| || | | |||||| | | ||| ||| | ||
Sbjct 49873 GGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAAGATCTTTGG 49814
Query 247 CTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295
|| ||| ||| ||||| || |||||||||| ||||| | ||||
Sbjct 49813 CTTGGTAAGCCTTTACCTTACCAACTACCTAATCTTACGCAAGCTCATC 49765
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1068796002688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |