Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq260 179 8e-43 seq336 98.7 2e-18 >seq260 Length=66046 Score = 179 bits (198), Expect = 8e-43 Identities = 216/295 (73%), Gaps = 19/295 (6%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCACACGT 60 |||||||||||| |||||||||||||||||||| | || ||| || | | Sbjct 23076 GGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATACCGTCATAATTC------- 23024 Query 61 GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGC 120 |||| || | ||||||||||||||| || ||| |||||||||||||||| Sbjct 23023 ------TTTT-----CTGAGAAAAGAAGTTTACAACCCATAGG-CCTTCATCCTTCACGC 22976 Query 121 TACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAG 180 | | ||| |||| || ||| |||||| || |||||||||||||||||||||||| Sbjct 22975 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCTCACTGCTGCCTCCCGTAG 22916 Query 181 GAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCAT 240 |||| ||| |||||||||||| ||| ||||| || | |||||||||||| ||| || Sbjct 22915 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGAACAGCTACTGAT 22856 Query 241 CGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 | | | || ||| ||| ||||| | || |||| ||||| |||| |||||| Sbjct 22855 CATTGCCTTGGTATGCCTTTACCACACCAACTAGCTAATCAGGCGCAAGCCCATC 22801 >seq336 Length=57273 Score = 98.7 bits (108), Expect = 2e-18 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 127 GCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTT 186 ||||| |||| || || |||||| |||||||||| |||||||| | | | | ||| Sbjct 49933 GCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGTTACTCTAAAGTATTT 49874 Query 187 GGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGG 246 || |||||||||||| ||||||||| || | | |||||| | | ||| ||| | || Sbjct 49873 GGGCCGTGTCTCAGTCCCAATGTGGCTGATCATTCTCTCAAACCAGCTAAAGATCTTTGG 49814 Query 247 CTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGCATCCCCATC 295 || ||| ||| ||||| || |||||||||| ||||| | |||| Sbjct 49813 CTTGGTAAGCCTTTACCTTACCAACTACCTAATCTTACGCAAGCTCATC 49765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1068796002688