Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq363 563 3e-158 >seq363 Length=7842 Score = 563 bits (624), Expect = 3e-158 Identities = 438/511 (86%), Gaps = 12/511 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| ||||| || |||| |||| |||||||||||||||||| Sbjct 1809 GTACTCATTCCAATTACCAGACCTGTGAG-GCCCGGTATTGTTATTTATTGTCACTACCT 1751 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1750 CCCTGTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 1691 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||| || | |||| |||||| | ||| |||| Sbjct 1690 TCTCAGGCTCCCTCTCCGGAATCGAACCCTGATCCTCCGTCACCCGTGAACACCTCGGTA 1631 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||| |||||||||| | ||||||||||||||||||||||||||||| ||||||||| Sbjct 1630 GGCCTCTATCCTACCGAC-AAAGTTGATAGGGCAGAAATTTGAATGAAACATCGCCGGTG 1572 Query 241 CA-AGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCC--CCGAAGGGCGTT 297 || || ||||||||||||| ||||||| |||| ||||| ||| | ||| || Sbjct 1571 CAGAGACCATGCGATTCGTAAAGTTATCATGAGTCACC-GCGAGTCGGGCGAGCCCGGTC 1513 Query 298 GGTTTTTTATCTAATAAATACACCCCTT---CCGAAGTCGGGGTTTTTAGCATGTATTAG 354 || || |||||||||||||||||||| || ||||||||| ||| ||| ||||||| Sbjct 1512 GGCCTTGGATCTAATAAATACACCCCTTCCACCAAAGTCGGGG-TTTGCGCAGGTATTAG 1454 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 |||||||||||| |||| ||||| |||| |||||| ||||||||||| |||||||||| Sbjct 1453 CTCTAGAATTACTACGGGTATCCCAGTAG-CAGGTACCATCAAATAAACTATAACTGATT 1395 Query 415 TAATGAGCCATTCGCAGTTTCACTGTA-TAGATTGCTTATACTTAGACATGCATGGCTTA 473 ||||||||||||||||||||||| ||| || | | ||||||| |||||||||||||||| Sbjct 1394 TAATGAGCCATTCGCAGTTTCACAGTAGTAAACAGGTTATACTCAGACATGCATGGCTTA 1335 Query 474 ATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||| Sbjct 1334 ATCTTTGAGACAAGCATATGACTACTGGCAG 1304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510394351104