Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq43 154 1e-32
seq99 138 9e-28
>seq43
Length=247289
Score = 154 bits (170), Expect = 1e-32
Identities = 239/339 (71%), Gaps = 2/339 (1%)
Strand=Plus/Plus
Query 66428 TCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCG 66487
|| ||||||||||||||||| || || ||||| ||||| || | |||| | || ||||||
Sbjct 177496 TCGAAGATGTCGGCATGCCAGGGCTCGAGGTACATGGCAAAGGCGCCCTTGCGCTTGCCG 177555
Query 66488 CCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCG 66547
|| || ||||| |||||||| ||| | ||||||||| |||| ||| || |||| |||
Sbjct 177556 CCTCCCTGGTCCACGTAGCGCGCGGTGTCGTTGAAGACGCGCAGCATGGGCACGATGCCG 177615
Query 66548 TTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATT 66606
|| ||| ||||||||| |||| ||| || ||| || || || | ||| | |
Sbjct 177616 TTGCTGGAGCCGTTGGTGCCGCGGATGTAGGA-CCCCGTGGCACGGATGTTGTGCATGCT 177674
Query 66607 CAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATAT 66666
||| || || || || || | ||| |||||||| || || || || || | | ||
Sbjct 177675 CAGGCCGATGCCGCCCGCGGACTTAGAGATGGCCGCGCACTCCTTCAGCGTGTCGTAGAT 177734
Query 66667 GCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGG 66726
||| || ||| ||| |||| |||| || ||| |||| || || ||||| |||
Sbjct 177735 GCCCTCGATGCTGTCGGCCTTCATGGACACTAGGAAGCAGGAGGACAGCTGGGGGCGGGG 177794
Query 66727 TGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAA 66765
||| |||| ||| || ||||| | ||||| || ||
Sbjct 177795 GGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGAGTGAA 177833
>seq99
Length=333813
Score = 138 bits (152), Expect = 9e-28
Identities = 230/328 (70%), Gaps = 7/328 (2%)
Strand=Plus/Plus
Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359
||||||||||||||||| ||||| ||||| ||||| ||||||||||| | || |
Sbjct 93068 TTCTACGGCTTCCAGATCGCCATCGAGAACATCCACAGCGAGATGTACAGCCTGCTGCTG 93127
Query 61360 GATACGTACATCAGGGAGCGGGCGGAACGTGAACGAT--TGTTCAATGCCATCGAGACGA 61417
||| ||||||||| ||| | |||| | | || || ||||| | |||| |||||||
Sbjct 93128 GATGCGTACATCAAGGA-CCCGCGGCAGAAGGAC-ATGCTGTTCCACGCCACCGAGACGG 93185
Query 61418 TACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA 61477
|||| | ||| ||| ||| || || ||||| | || |||||| | || || |
Sbjct 93186 TACCAGTGGTCAAGAAGAAGGCCGACTGGGCGCTGAAGTGGATCTCGAGCGCA---GAGC 93242
Query 61478 CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGT 61537
||| | || || || | || ||||| || ||||| |||| ||| || || |
Sbjct 93243 GATTCGCCGAGCGCCTGGTCGCCTTTGCCTGCGTGGAGGGCATATTCTTCTCCGGCTCCT 93302
Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597
| | | |||| ||| ||||||| || || || ||||| || ||||||||| ||| |
Sbjct 93303 TCTGCTCCATCTACTGGGTGAAGAAGCGGGGGCTCATGCCGGGGCTGACCTTCTCCAACG 93362
Query 61598 AGTTGATATCACGCGACGAGGGCATGCA 61625
|| | || || ||||| |||||| ||||
Sbjct 93363 AGCTCATCTCCCGCGATGAGGGCCTGCA 93390
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397566187835360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |