Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq43 154 1e-32 seq99 138 9e-28 >seq43 Length=247289 Score = 154 bits (170), Expect = 1e-32 Identities = 239/339 (71%), Gaps = 2/339 (1%) Strand=Plus/Plus Query 66428 TCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCG 66487 || ||||||||||||||||| || || ||||| ||||| || | |||| | || |||||| Sbjct 177496 TCGAAGATGTCGGCATGCCAGGGCTCGAGGTACATGGCAAAGGCGCCCTTGCGCTTGCCG 177555 Query 66488 CCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCG 66547 || || ||||| |||||||| ||| | ||||||||| |||| ||| || |||| ||| Sbjct 177556 CCTCCCTGGTCCACGTAGCGCGCGGTGTCGTTGAAGACGCGCAGCATGGGCACGATGCCG 177615 Query 66548 TTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGT-GCCCGTATATCGTGAACATT 66606 || ||| ||||||||| |||| ||| || ||| || || || | ||| | | Sbjct 177616 TTGCTGGAGCCGTTGGTGCCGCGGATGTAGGA-CCCCGTGGCACGGATGTTGTGCATGCT 177674 Query 66607 CAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTGTCCGGAATAT 66666 ||| || || || || || | ||| |||||||| || || || || || | | || Sbjct 177675 CAGGCCGATGCCGCCCGCGGACTTAGAGATGGCCGCGCACTCCTTCAGCGTGTCGTAGAT 177734 Query 66667 GCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGGG 66726 ||| || ||| ||| |||| |||| || ||| |||| || || ||||| ||| Sbjct 177735 GCCCTCGATGCTGTCGGCCTTCATGGACACTAGGAAGCAGGAGGACAGCTGGGGGCGGGG 177794 Query 66727 TGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAA 66765 ||| |||| ||| || ||||| | ||||| || || Sbjct 177795 GGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGAGTGAA 177833 >seq99 Length=333813 Score = 138 bits (152), Expect = 9e-28 Identities = 230/328 (70%), Gaps = 7/328 (2%) Strand=Plus/Plus Query 61300 TTCTACGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATC 61359 ||||||||||||||||| ||||| ||||| ||||| ||||||||||| | || | Sbjct 93068 TTCTACGGCTTCCAGATCGCCATCGAGAACATCCACAGCGAGATGTACAGCCTGCTGCTG 93127 Query 61360 GATACGTACATCAGGGAGCGGGCGGAACGTGAACGAT--TGTTCAATGCCATCGAGACGA 61417 ||| ||||||||| ||| | |||| | | || || ||||| | |||| ||||||| Sbjct 93128 GATGCGTACATCAAGGA-CCCGCGGCAGAAGGAC-ATGCTGTTCCACGCCACCGAGACGG 93185 Query 61418 TACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTA 61477 |||| | ||| ||| ||| || || ||||| | || |||||| | || || | Sbjct 93186 TACCAGTGGTCAAGAAGAAGGCCGACTGGGCGCTGAAGTGGATCTCGAGCGCA---GAGC 93242 Query 61478 CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGT 61537 ||| | || || || | || ||||| || ||||| |||| ||| || || | Sbjct 93243 GATTCGCCGAGCGCCTGGTCGCCTTTGCCTGCGTGGAGGGCATATTCTTCTCCGGCTCCT 93302 Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597 | | | |||| ||| ||||||| || || || ||||| || ||||||||| ||| | Sbjct 93303 TCTGCTCCATCTACTGGGTGAAGAAGCGGGGGCTCATGCCGGGGCTGACCTTCTCCAACG 93362 Query 61598 AGTTGATATCACGCGACGAGGGCATGCA 61625 || | || || ||||| |||||| |||| Sbjct 93363 AGCTCATCTCCCGCGATGAGGGCCTGCA 93390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397566187835360