Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq84 116 2e-20 seq152 98.7 4e-15 seq88 91.5 6e-13 seq43 86.0 3e-11 >seq84 Length=279745 Score = 116 bits (128), Expect = 2e-20 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 349082 ATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGG 349141 |||||| | || | |||| ||||| |||||||||||||||| ||||| ||||||||| Sbjct 191314 ATCTCCGTCAGCCGCGGCACACCCAGCGTCACGTTCTTGGCCGACACGCCCGCAAAGTGG 191373 Query 349142 AAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCT 349201 ||||| | ||| |||| ||||||| ||||| ||||||| ||| |||| | |||| Sbjct 191374 AAGGTGTTGAGCGTCATCTGCGTGGTCGGCTCCCCGATGCTCTGCGCCGCCACCGTGCCC 191433 Query 349202 ACCATCTCGCCGGGCGC 349218 |||| ||| |||||||| Sbjct 191434 ACCACCTCCCCGGGCGC 191450 >seq152 Length=509958 Score = 98.7 bits (108), Expect = 4e-15 Identities = 84/104 (81%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 349073 GCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCG 349132 |||| || ||||||||||| | || | ||||| ||||||||| ||| |||||||||| Sbjct 475013 GCGTTGATGATCTCCTTGAGCCGCGGGACTCCCAGCGTCACGTTCATGGACGCGACGCCG 475072 Query 349133 GCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCC 349176 ||||||||||| || | ||| |||| ||||||| |||||||| Sbjct 475073 GCAAAGTGGAACGTTTTGAGCGTCATCTGCGTGCCAGGCTCGCC 475116 >seq88 Length=544131 Score = 91.5 bits (100), Expect = 6e-13 Identities = 129/179 (72%), Gaps = 8/179 (4%) Strand=Plus/Plus Query 449006 GTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCCGCG 449065 |||||||| || ||| || | |||||||||||||| | ||||||| | | ||| | || Sbjct 449291 GTCATGCGGGAGGGGAAGCCGTGCGGGTTCATGATCAGGTCGGGCACCACCCCGCGCTCG 449350 Query 449066 TTGAAGGGCATGTC---CTCGGGGTTGAC-CACCAGGCCGTTGACGCCCTTCTGGCCGTG 449121 |||||| | ||| |||||| || |||| || ||||||||||||||||| Sbjct 449351 GAGAAGGGGAGGTCGGCCTCGGGCACGATGCACCCAACC----ACGCCCTTCTGGCCGTG 449406 Query 449122 GCGGCTGCAGAACTTGTCCCCCTGCTCGGGCTTGCGTGTGAAGCGCAGCACGATCTTGA 449180 ||| | |||||||||| ||| ||||||| |||||| |||| || | ||||| Sbjct 449407 GCGAGAGGAGAACTTGTCGCCCAGCTCGGGGCGCCGTGTGTGCCGCACCAGCACCTTGA 449465 >seq43 Length=247289 Score = 86.0 bits (94), Expect = 3e-11 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 449005 GGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCCGC 449064 |||||||||||||||| ||| |||||||| ||||| | ||||||| ||| |||| Sbjct 47746 GGTCATGCGCGACGGGATGGCGTGCGGGTTGATGATCAGGTCGGGCACGATGCCCTCCGC 47805 Query 449065 GTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCG 449124 | |||||||||||||||| || || | |||| || ||||||||| ||||| || Sbjct 47806 GGTGAAGGGCATGTCCTCCTGGGTGTAGGTGATGCCGATGGTGCCCTTCTGCCCGTGCCG 47865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2084728966536452