Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_027867.1
Length=651523
Score E
Sequences producing significant alignments: (Bits) Value
seq84 116 2e-20
seq152 98.7 4e-15
seq88 91.5 6e-13
seq43 86.0 3e-11
>seq84
Length=279745
Score = 116 bits (128), Expect = 2e-20
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 349082 ATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGG 349141
|||||| | || | |||| ||||| |||||||||||||||| ||||| |||||||||
Sbjct 191314 ATCTCCGTCAGCCGCGGCACACCCAGCGTCACGTTCTTGGCCGACACGCCCGCAAAGTGG 191373
Query 349142 AAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCT 349201
||||| | ||| |||| ||||||| ||||| ||||||| ||| |||| | ||||
Sbjct 191374 AAGGTGTTGAGCGTCATCTGCGTGGTCGGCTCCCCGATGCTCTGCGCCGCCACCGTGCCC 191433
Query 349202 ACCATCTCGCCGGGCGC 349218
|||| ||| ||||||||
Sbjct 191434 ACCACCTCCCCGGGCGC 191450
>seq152
Length=509958
Score = 98.7 bits (108), Expect = 4e-15
Identities = 84/104 (81%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 349073 GCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCG 349132
|||| || ||||||||||| | || | ||||| ||||||||| ||| ||||||||||
Sbjct 475013 GCGTTGATGATCTCCTTGAGCCGCGGGACTCCCAGCGTCACGTTCATGGACGCGACGCCG 475072
Query 349133 GCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCC 349176
||||||||||| || | ||| |||| ||||||| ||||||||
Sbjct 475073 GCAAAGTGGAACGTTTTGAGCGTCATCTGCGTGCCAGGCTCGCC 475116
>seq88
Length=544131
Score = 91.5 bits (100), Expect = 6e-13
Identities = 129/179 (72%), Gaps = 8/179 (4%)
Strand=Plus/Plus
Query 449006 GTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCCGCG 449065
|||||||| || ||| || | |||||||||||||| | ||||||| | | ||| | ||
Sbjct 449291 GTCATGCGGGAGGGGAAGCCGTGCGGGTTCATGATCAGGTCGGGCACCACCCCGCGCTCG 449350
Query 449066 TTGAAGGGCATGTC---CTCGGGGTTGAC-CACCAGGCCGTTGACGCCCTTCTGGCCGTG 449121
|||||| | ||| |||||| || |||| || |||||||||||||||||
Sbjct 449351 GAGAAGGGGAGGTCGGCCTCGGGCACGATGCACCCAACC----ACGCCCTTCTGGCCGTG 449406
Query 449122 GCGGCTGCAGAACTTGTCCCCCTGCTCGGGCTTGCGTGTGAAGCGCAGCACGATCTTGA 449180
||| | |||||||||| ||| ||||||| |||||| |||| || | |||||
Sbjct 449407 GCGAGAGGAGAACTTGTCGCCCAGCTCGGGGCGCCGTGTGTGCCGCACCAGCACCTTGA 449465
>seq43
Length=247289
Score = 86.0 bits (94), Expect = 3e-11
Identities = 91/120 (76%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 449005 GGTCATGCGCGACGGGTAGGCATGCGGGTTCATGATGATGTCGGGCGTCTCGCCGGCCGC 449064
|||||||||||||||| ||| |||||||| ||||| | ||||||| ||| ||||
Sbjct 47746 GGTCATGCGCGACGGGATGGCGTGCGGGTTGATGATCAGGTCGGGCACGATGCCCTCCGC 47805
Query 449065 GTTGAAGGGCATGTCCTCGGGGTTGACCACCAGGCCGTTGACGCCCTTCTGGCCGTGGCG 449124
| |||||||||||||||| || || | |||| || ||||||||| ||||| ||
Sbjct 47806 GGTGAAGGGCATGTCCTCCTGGGTGTAGGTGATGCCGATGGTGCCCTTCTGCCCGTGCCG 47865
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2084728966536452
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |