Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq243 661 0.0 seq260 484 7e-132 >seq243 Length=18593 Score = 661 bits (732), Expect = 0.0 Identities = 735/978 (75%), Gaps = 2/978 (0%) Strand=Plus/Minus Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862 || || ||||||||||| || | |||||| | ||||| |||||||| || || || Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787 Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGCTTC-ATCGTCGCCTTCATCGCTGCTCC 159921 |||||||| || | || ||||||||| ||| || || |||| || ||||||||||| Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTA-CTGTTTTTATTATCGCTTTTATCGCTGCTCC 3728 Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981 || || || || ||||| || || ||||| || | |||||| | | || || || || Sbjct 3727 GCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAA 3668 Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041 ||| || ||||| || || || || |||| |||||||||||| | || || || || || Sbjct 3667 CATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAAT 3608 Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGT 160101 |||||||| || || || ||||| ||| | ||||| ||||| |||| |||||| | || Sbjct 3607 CTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGT 3548 Query 160102 CTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 160161 | ||||| | | || || | | | || ||||||||||| |||||| | |||| ||| Sbjct 3547 ATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCG 3488 Query 160162 TCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGC 160221 | | ||||||||||| |||||| ||||| || || || || || ||||| ||| |||| Sbjct 3487 TTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGC 3428 Query 160222 TGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160281 ||||||| | | || || | || || ||||| ||||| |||| |||||| | ||||| Sbjct 3427 TGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTAT 3368 Query 160282 CTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCC 160341 ||||||||||| || | |||| | ||||||||||||||||| || || | ||||| || Sbjct 3367 TTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCC 3308 Query 160342 GTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGG 160401 ||||| ||||| ||||||||||| ||||| ||||| || | || ||||| |||||||| Sbjct 3307 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGG 3248 Query 160402 ATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGG 160461 || | || |||||| | | | | || || || |||| || || ||| ||| Sbjct 3247 TTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGG 3188 Query 160462 TTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGG 160521 |||||| ||||| ||| | ||||| |||||||||||||| || || ||||| || ||||| Sbjct 3187 TTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGG 3128 Query 160522 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGC 160581 |||||| || |||||||| ||||| ||||| ||||| || ||| | ||||||||| | || Sbjct 3127 TCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGC 3068 Query 160582 TGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAA 160641 ||||||||| |||||||| || ||||| ||||| | ||| |||| || |||||||| || Sbjct 3067 TGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAA 3008 Query 160642 TCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACAC 160701 | |||||||||||||| ||||| || | | || ||||| | ||| | ||||| Sbjct 3007 CTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACAC 2948 Query 160702 TTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGC 160761 |||||| || | ||||||| ||| ||| || |||||||| ||||| || ||||| || Sbjct 2947 TTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGC 2888 Query 160762 TCACAACTTCCCTCTCGA 160779 ||||| ||||| || || Sbjct 2887 ACACAATTTCCCACTAGA 2870 >seq260 Length=66046 Score = 484 bits (536), Expect = 7e-132 Identities = 728/1026 (71%), Gaps = 14/1026 (1%) Strand=Plus/Minus Query 161509 GGGTGGTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGG 161568 || ||||| ||| || |||| ||||||||| || |||||||| || ||| |||||||| Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598 Query 161569 TCTGGACTTCTTCTTTTTCCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCAC 161627 || || || || || ||||| ||||| ||| | || | || |||||| | ||||| || Sbjct 57597 TCAGGTCTA-TTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539 Query 161628 GACTTTCGCTACGAGCT-GGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGT-GCA 161685 || || | || | || ||||||| ||||| | |||| ||| ||| | |||||| ||| Sbjct 57538 AACATTTG-TAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCA 57480 Query 161686 AATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT 161745 | |||| | || | || ||| || || ||| | |||||| |||||| | | || Sbjct 57479 ACTTTT-TAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCTTTATTATTT 57421 Query 161746 CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGG 161805 | |||||||| || |||||||| ||||| | ||| ||||||||| || || ||| Sbjct 57420 TTATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGG 57361 Query 161806 AATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAA 161865 | ||||| || || ||||| ||||| || | |||||||| ||||||||||| || ||| Sbjct 57360 ACATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAA 57301 Query 161866 CTTGCTCGTCTTATCGGT----ATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTAT 161921 | || ||| || || || || || || || || ||||| || |||| ||||| Sbjct 57300 ATCGCACGT----TCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTAT 57245 Query 161922 TGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGC 161981 ||| |||||||| || ||| | || || || | || || || ||||| || || Sbjct 57244 TGCAGTTTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGC 57185 Query 161982 GCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAA 162041 || ||||| ||||| ||||||||| | || | | ||| | |||||||||||||| Sbjct 57184 ACCGAGTTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAA 57125 Query 162042 TTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCT 162101 ||||| | ||||| || || ||||||||||| || ||| | | || | ||| | || Sbjct 57124 CTGGACTTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCT 57065 Query 162102 CTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAA 162161 | ||| ||||| || | || || ||||| || || | ||||||| || ||||| Sbjct 57064 TTGTGCAATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAA 57005 Query 162162 TACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAA 162221 || || || ||| | | || |||| || || ||||| || | || || || || Sbjct 57004 CACATTTCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAA 56945 Query 162222 CCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTT 162281 || || |||||||| || |||||| | || ||| |||||| |||||||| |||||||| Sbjct 56944 TCGCTTTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTT 56885 Query 162282 TATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGC 162341 |||| | || || || || | ||| | ||||| ||| || | ||| | | || | || Sbjct 56884 TATGTTATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGC 56825 Query 162342 TCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGA 162401 | ||| | ||||| | ||| || || || || || |||||||| || || || || || Sbjct 56824 ATTAAATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGA 56765 Query 162402 ATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGC 162461 ||||||||| || || || || ||||| || |||||||||||| ||||||| ||| |||| Sbjct 56764 ATTTGAAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGC 56705 Query 162462 ACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAA 162521 | ||||| || ||||| || || |||||||| ||||| ||| | || | || || Sbjct 56704 TGCTCAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAA 56645 Query 162522 CGCACT 162527 ||| || Sbjct 56644 CGCTCT 56639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551373422317200