Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_031903.1
Length=172345
Score E
Sequences producing significant alignments: (Bits) Value
seq243 661 0.0
seq260 484 7e-132
>seq243
Length=18593
Score = 661 bits (732), Expect = 0.0
Identities = 735/978 (75%), Gaps = 2/978 (0%)
Strand=Plus/Minus
Query 159803 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTCCTG 159862
|| || ||||||||||| || | |||||| | ||||| |||||||| || || ||
Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787
Query 159863 ATGATCCCAACTCTGTTGGCAGCAACTATCTGCTTC-ATCGTCGCCTTCATCGCTGCTCC 159921
|||||||| || | || ||||||||| ||| || || |||| || |||||||||||
Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTA-CTGTTTTTATTATCGCTTTTATCGCTGCTCC 3728
Query 159922 CCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTACGGTAACAA 159981
|| || || || ||||| || || ||||| || | |||||| | | || || || ||
Sbjct 3727 GCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAA 3668
Query 159982 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 160041
||| || ||||| || || || || |||| |||||||||||| | || || || || ||
Sbjct 3667 CATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAAT 3608
Query 160042 TTGGGAAGCCGCATCGCTCGACGAGTGGCTCTATAACGGTGGTCCTTTCCAACTCGTAGT 160101
|||||||| || || || ||||| ||| | ||||| ||||| |||| |||||| | ||
Sbjct 3607 CTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGT 3548
Query 160102 CTTCCACTTCCTGATCGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCG 160161
| ||||| | | || || | | | || ||||||||||| |||||| | |||| |||
Sbjct 3547 ATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCG 3488
Query 160162 TCTCGGTATGCGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCTGCTTCTGC 160221
| | ||||||||||| |||||| ||||| || || || || || ||||| ||| ||||
Sbjct 3487 TTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGC 3428
Query 160222 TGTATTCCTCGTCTACCCCTTCGGTCAGGGTTCTTTCTCCGATGCTATGCCTCTTGGTAT 160281
||||||| | | || || | || || ||||| ||||| |||| |||||| | |||||
Sbjct 3427 TGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTAT 3368
Query 160282 CTCTGGTACTTTTAACTATATGCTTGTATTCCAAGCAGAACACAATATCCTTATGCATCC 160341
||||||||||| || | |||| | ||||||||||||||||| || || | ||||| ||
Sbjct 3367 TTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCC 3308
Query 160342 GTTCCACATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTGTTCTCTGCTATGCATGG 160401
||||| ||||| ||||||||||| ||||| ||||| || | || ||||| ||||||||
Sbjct 3307 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGG 3248
Query 160402 ATCTCTGGTTACTTCTAGTCTCGTCAGAGAGACGACAGAAACTGAGTCCCAGAACTATGG 160461
|| | || |||||| | | | | || || || |||| || || ||| |||
Sbjct 3247 TTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGG 3188
Query 160462 TTACAAGTTCGGTCAAGAGGAAGAGACTTACAACATCGTCGCAGCACATGGCTACTTCGG 160521
|||||| ||||| ||| | ||||| |||||||||||||| || || ||||| || |||||
Sbjct 3187 TTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGG 3128
Query 160522 TCGTTTGATCTTCCAATATGCATCCTTTAACAACTCACGCTCTCTGCACTTCTTCCTCGC 160581
|||||| || |||||||| ||||| ||||| ||||| || ||| | ||||||||| | ||
Sbjct 3127 TCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGC 3068
Query 160582 TGCTTGGCCTGTTGTTGGAATCTGGTTCACTGCCCTTGGTGTTTCTACCATGGCATTCAA 160641
||||||||| |||||||| || ||||| ||||| | ||| |||| || |||||||| ||
Sbjct 3067 TGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAA 3008
Query 160642 TCTCAATGGTTTCAACTTCAACCAGTCCATCTTGGACAACCAAGGACAAGTTCTGAACAC 160701
| |||||||||||||| ||||| || | | || ||||| | ||| | |||||
Sbjct 3007 CTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACAC 2948
Query 160702 TTGGGCAGACGTGCTTAACCGCGCTGGTCTGGGCATGGAAGTCATGCACGAGCGTAACGC 160761
|||||| || | ||||||| ||| ||| || |||||||| ||||| || ||||| ||
Sbjct 2947 TTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGC 2888
Query 160762 TCACAACTTCCCTCTCGA 160779
||||| ||||| || ||
Sbjct 2887 ACACAATTTCCCACTAGA 2870
>seq260
Length=66046
Score = 484 bits (536), Expect = 7e-132
Identities = 728/1026 (71%), Gaps = 14/1026 (1%)
Strand=Plus/Minus
Query 161509 GGGTGGTTCGATGTCCTTGACGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGCTGG 161568
|| ||||| ||| || |||| ||||||||| || |||||||| || ||| ||||||||
Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598
Query 161569 TCTGGACTTCTTCTTTTTCCC-ACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCAC 161627
|| || || || || ||||| ||||| ||| | || | || |||||| | ||||| ||
Sbjct 57597 TCAGGTCTA-TTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539
Query 161628 GACTTTCGCTACGAGCT-GGTATACCCATGGACTCGCTAGTTCCTATCTTGAGGGT-GCA 161685
|| || | || | || ||||||| ||||| | |||| ||| ||| | |||||| |||
Sbjct 57538 AACATTTG-TAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCA 57480
Query 161686 AATTTTCTTACAGCGGCAGTTAGCACTCCAGCTGACGCTATGGGTCATTCTCTTCTTCTT 161745
| |||| | || | || ||| || || ||| | |||||| |||||| | | ||
Sbjct 57479 ACTTTT-TAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCTTTATTATTT 57421
Query 161746 CTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGG 161805
| |||||||| || |||||||| ||||| | ||| ||||||||| || || |||
Sbjct 57420 TTATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGG 57361
Query 161806 AATTTTGTGGCGCTCCACGGGGCTTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAA 161865
| ||||| || || ||||| ||||| || | |||||||| ||||||||||| || |||
Sbjct 57360 ACATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAA 57301
Query 161866 CTTGCTCGTCTTATCGGT----ATCCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTAT 161921
| || ||| || || || || || || || || ||||| || |||| |||||
Sbjct 57300 ATCGCACGT----TCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTAT 57245
Query 161922 TGCTGTTTTTGTCAGCGTCTTTCTCATATATCCTCTGGGACAGTCGTCCTGGTTCTTCGC 161981
||| |||||||| || ||| | || || || | || || || ||||| || ||
Sbjct 57244 TGCAGTTTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGC 57185
Query 161982 GCCATCGTTTGGGGTTGCCGCTATTTTCAGGTTCTTACTTTTCCTACAAGGTTTCCACAA 162041
|| ||||| ||||| ||||||||| | || | | ||| | ||||||||||||||
Sbjct 57184 ACCGAGTTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAA 57125
Query 162042 TTGGACGCTTAATCCGTTCCACATGATGGGTGTCGCAGGTATCTTGGGTGGTGCTTTGCT 162101
||||| | ||||| || || ||||||||||| || ||| | | || | ||| | ||
Sbjct 57124 CTGGACTTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCT 57065
Query 162102 CTCTGCTATTCACGGTGTGACTGTTGAAAACACGCTCTACCAAGATGGTGAACAAGCAAA 162161
| ||| ||||| || | || || ||||| || || | ||||||| || |||||
Sbjct 57064 TTGTGCAATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAA 57005
Query 162162 TACTTTCAAGGCTTTTGACTCTACGCAAGAGGAGGAGACTTACTCGATGGTTACTGCGAA 162221
|| || || ||| | | || |||| || || ||||| || | || || || ||
Sbjct 57004 CACATTTCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAA 56945
Query 162222 CCGTTTCTGGTCACAGATCTTCGGTATTGCTTTTAGTAATAAGCGTTGGTTGCATTTCTT 162281
|| || |||||||| || |||||| | || ||| |||||| |||||||| ||||||||
Sbjct 56944 TCGCTTTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTT 56885
Query 162282 TATGCTCTTCGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGC 162341
|||| | || || || || | ||| | ||||| ||| || | ||| | | || | ||
Sbjct 56884 TATGTTATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGC 56825
Query 162342 TCTTAATCTTCGTGCTTACGACTTTGTATCTCAGGAGATTCGTGCAGCGGAGGATCCTGA 162401
| ||| | ||||| | ||| || || || || || |||||||| || || || || ||
Sbjct 56824 ATTAAATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGA 56765
Query 162402 ATTTGAAACCTTCTACACCAAGAATATCCTCTTGAATGAAGGTCTTCGTGCATGGTTGGC 162461
||||||||| || || || || ||||| || |||||||||||| ||||||| ||| ||||
Sbjct 56764 ATTTGAAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGC 56705
Query 162462 ACCAGTTGATCAACCGCATGAGAACTTTGTATTCCCTGAGGAAGTTCTGCCTAGAGGTAA 162521
| ||||| || ||||| || || |||||||| ||||| ||| | || | || ||
Sbjct 56704 TGCTCAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAA 56645
Query 162522 CGCACT 162527
||| ||
Sbjct 56644 CGCTCT 56639
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 551373422317200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |