Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq243 726 0.0 seq260 533 2e-146 >seq243 Length=18593 Score = 726 bits (804), Expect = 0.0 Identities = 758/990 (77%), Gaps = 4/990 (0%) Strand=Plus/Minus Query 188851 TTCTGCGAATGGGTCACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 188910 || || || ||||| || ||| | ||||| | ||||| |||||||| ||||| || Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787 Query 188911 ATGATCCCTACGCTTCTCGCTGCAACCATCTGCTTC-ATCGTCGCCTTTGTCGCTGCACC 188969 ||||||||||| | | | ||||| | ||| || || |||| ||| ||||||| || Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTA-CTGTTTTTATTATCGCTTTTATCGCTGCTCC 3728 Query 188970 CCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 189029 || ||||| |||||||| || |||||||| || | |||||| | | |||||||| || Sbjct 3727 GCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAA 3668 Query 189030 CATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTGGTCTTCACTTCTACCCCAT 189089 ||| || ||||| ||||| || || | || |||||||||||| | || || ||||| || Sbjct 3667 CATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAAT 3608 Query 189090 CTGGGAAGCCGCCTCACTCGATGAGTGGCTCTACAACGGTGGTCCTTTCCAACTGGTAGT 189149 ||||||||| || || || || || ||| | || || ||||| |||| |||||| | || Sbjct 3607 CTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGT 3548 Query 189150 CTTCCACTTCCTCATCGGCATCTACGCCTACATGGGTCGTGAGTGGGAACTCTCTTACCG 189209 | ||||| || | || || | | |||||||||||||| |||||| | |||| ||| Sbjct 3547 ATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCG 3488 Query 189210 TCTCGGTATGCGTCCTTGGATCTGCA-TTGCTTACTCTGCACCTGTTGCAGCAGCATCCG 189268 | | ||||||||||| |||||| ||| ||||||| || ||||||||||| ||||| | | Sbjct 3487 TTTAGGTATGCGTCCGTGGATC-GCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTG 3429 Query 189269 CAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCTGACGCAATGCCCTTGGGTA 189328 | || || | | ||||| |||| |||||||| |||||||| | ||||| || |||| Sbjct 3428 CTGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTA 3369 Query 189329 TCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACC 189388 | ||| || ||||| | ||| | || ||||||||||| || ||||| | ||||||| Sbjct 3368 TTTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACC 3309 Query 189389 CCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCACTGTTCTCCGCAATGCATG 189448 | ||||| ||||| || || || ||||| || ||||||||| | || || |||||||||| Sbjct 3308 CATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATG 3249 Query 189449 GTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACCGAGTCCCAGAACTATG 189508 ||||| | || || ||||| | |||||||||| ||||||| ||| || ||| || Sbjct 3248 GTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTG 3189 Query 189509 GTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTTGCTGCTCATGGATATTTCG 189568 ||||||| || |||||| |||||||||| ||||||||||| ||||||||||||||||||| Sbjct 3188 GTTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCG 3129 Query 189569 GTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTCG 189628 ||||| | || |||||||| ||||| || || ||||| ||||| | ||||||||| | | Sbjct 3128 GTCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAG 3069 Query 189629 CTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCATGGCATTCA 189688 |||| |||||||| || ||||| |||||||| || | || | || |||||||| | Sbjct 3068 CTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTA 3009 Query 189689 ACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTGTTCTGAACA 189748 || | ||||| |||||||| || ||||| | ||||| |||||||||||| | |||| Sbjct 3008 ACTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACA 2949 Query 189749 CATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATGAGCGTAACG 189808 | ||||| || || | ||||||||| ||||||||||||||| |||||||| ||||| | Sbjct 2948 CTTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATG 2889 Query 189809 CTCACAACTTCCCTCTTGATCTGGCAGCAG 189838 | ||||| ||||| || ||| | |||| || Sbjct 2888 CACACAATTTCCCACTAGATTTAGCAGTAG 2859 >seq260 Length=66046 Score = 533 bits (590), Expect = 2e-146 Identities = 738/1025 (72%), Gaps = 6/1025 (1%) Strand=Plus/Minus Query 189984 TGGTTTGACATCCTTGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCT 190043 |||||||| ||| |||||||||||||| || ||||| ||||| ||| | || ||||| Sbjct 57654 TGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGGTCA 57595 Query 190044 GGATTACTTCTTTTTCCC-ACTGCTTATCTCGCAATTGGTGGCTGGCTTACTGGCACGAC 190102 || || || || ||||| ||||| ||| | ||| | ||||| ||| | ||||| || || Sbjct 57594 GGTCTA-TTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAACAAC 57536 Query 190103 GTTTGCTACAAGCTGGTACACCCACGGACTCGCAAGTAGTTACCTTGAGGGTGCTAATTT 190162 |||| | ||||| || || || | || | | ||| | |||||| || || Sbjct 57535 ATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAACTT 57476 Query 190163 TCTTACAGCGGCTGTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT-T 190221 | | || | ||||| || || || ||| || |||||| |||||| || || | || | Sbjct 57475 TTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCT-TTATTATTTTTAT 57417 Query 190222 GGGGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAACTTGGGGGACTCTGGGCTT 190281 ||||||| ||| ||||||| ||||| | ||| ||||||||| || || ||| | | Sbjct 57416 GGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACAT 57357 Query 190282 TTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATGCTTCGTCAGTTTGAACTGG 190341 |||| || || ||||| ||||| || |||||||||| ||||||||||| || ||| | | Sbjct 57356 TTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAATCG 57297 Query 190342 CACGTCTCA-TCGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTT 190400 ||||| ||| | || || || || || || ||||| || |||| ||||| || ||| Sbjct 57296 CACGT-TCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAGTT 57238 Query 190401 TTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCC 190460 |||||| || ||| | || ||||| | |||||||| |||||||| || || || Sbjct 57237 TTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGAGT 57178 Query 190461 TTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCAGGGCTTCCATAACTGGACG 190520 || ||||| ||||| || ||||| || | | ||||| || || ||||| |||||||| Sbjct 57177 TTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGGACT 57118 Query 190521 CTGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGGAGGAGCACTACTGTCAGCA 190580 |||| || || || |||||||||||||| ||| | || |||| || || || | ||| Sbjct 57117 TTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGTGCA 57058 Query 190581 ATCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGGTGAACAAGCAAACACGTTT 190640 || ||||| | || ||||| |||||| | | ||||||||| || |||||||| ||| Sbjct 57057 ATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACACATTT 56998 Query 190641 AAAGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTC 190700 || || | | || |||| ||||| || ||||| | || || || || || || Sbjct 56997 CGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCGCTTT 56938 Query 190701 TGGTCTCAAATCTTTGGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTC 190760 ||||| ||||| || ||||| ||||| |||||| | ||||| |||||||||||| | Sbjct 56937 TGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTATGTTA 56878 Query 190761 TTTGTTCCTGTTATGGGTCTGTGGACTTCTTCCATCGGTATTATTGGTCTTGCTCTCAAC 190820 ||||| || || | ||| | |||||| | | | ||| | | || | || | || Sbjct 56877 TTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATTAAAT 56818 Query 190821 CTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAG 190880 | ||||| | || || || || ||||| || | || || ||||| ||||| || || Sbjct 56817 TTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATTTGAA 56758 Query 190881 ACTTTTTACACAAAAAATATACTTTTGAATGAAGGTCTTCGTTCATGGTTGGCACCTGTT 190940 |||||||| ||||||||||| ||||||||||||||| ||||| | ||| |||| || Sbjct 56757 ACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGCTCAA 56698 Query 190941 GATCAACCCCATGAGAATTTTGTATTTCCAGAAGAAGTATTGCCAAGAGGCAACGCTCTG 191000 ||||| || ||||| || || ||||| ||||| || || || ||| | || |||||||| Sbjct 56697 GATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTCTT 56638 Query 191001 TGATA 191005 | ||| Sbjct 56637 TAATA 56633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634077035676000