Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq5 206 1e-50 >seq5 Length=3276 Score = 206 bits (228), Expect = 1e-50 Identities = 219/283 (77%), Gaps = 7/283 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463 || ||||||||| ||||||||||||||||||| |||| ||||||| |||| | | Sbjct 2656 CGACCCGTCTTGTAACACGGACCAAGGAGTCTGACATGCGTGCGAGTCGACGGGTTCTGA 2597 Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT--GCACCATCG 520 |||| | | ||| || ||| ||| ||| |||| || | | || ||||| | Sbjct 2596 AACCTGGGATGCGCAAGGAAGCTGAC--GAGC-GGGAGGCCCTCACGGGCCGCACCGCTG 2540 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 |||| |||||| | || || || || |||| ||||| |||| ||||||||||||| Sbjct 2539 GCCGACCCTGATCTTTTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGA 2480 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| |||||||||||||||||||||||||||||| |||| Sbjct 2479 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGA 2420 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 2419 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 2377 Score = 152 bits (168), Expect = 2e-34 Identities = 138/174 (79%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || || || || |||||||| |||||||||||||||||| | || ||| |||| | | | Sbjct 3044 GAGGCGCCGTCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAGACTCC 2985 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145 || || |||||||| ||| |||||||||||||| ||||||| | || ||||||||| Sbjct 2984 GTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGA 2925 Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||| |||||| ||||||||| ||| || | |||||||| | ||||||||| Sbjct 2924 AAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGGGAAGCG 2871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079971128300