Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015-
11-03] 1,346 sequences; 56,992,954 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq5 206 1e-50
>seq5
Length=3276
Score = 206 bits (228), Expect = 1e-50
Identities = 219/283 (77%), Gaps = 7/283 (2%)
Strand=Plus/Minus
Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTG-TCA 463
|| ||||||||| ||||||||||||||||||| |||| ||||||| |||| | |
Sbjct 2656 CGACCCGTCTTGTAACACGGACCAAGGAGTCTGACATGCGTGCGAGTCGACGGGTTCTGA 2597
Query 464 AACCCGTGC-GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGT--GCACCATCG 520
|||| | | ||| || ||| ||| ||| |||| || | | || ||||| |
Sbjct 2596 AACCTGGGATGCGCAAGGAAGCTGAC--GAGC-GGGAGGCCCTCACGGGCCGCACCGCTG 2540
Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580
|||| |||||| | || || || || |||| ||||| |||| |||||||||||||
Sbjct 2539 GCCGACCCTGATCTTTTGTGAAGGGTTCGAGTTGGAGCACGCCTGTCGGGACCCGAAAGA 2480
Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640
||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||
Sbjct 2479 TGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGA 2420
Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
| ||| ||||||||||| ||||| | ||||||||||||||||
Sbjct 2419 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 2377
Score = 152 bits (168), Expect = 2e-34
Identities = 138/174 (79%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85
|| || || || |||||||| |||||||||||||||||| | || ||| |||| | | |
Sbjct 3044 GAGGCGCCGTCAACGAGTCGGGTTGTTTGGGAATGCAGCCCAAATCGGGCGGTAGACTCC 2985
Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGA 145
|| || |||||||| ||| |||||||||||||| ||||||| | || |||||||||
Sbjct 2984 GTCCAAGGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGA 2925
Query 146 AAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199
|||| |||||| ||||||||| ||| || | |||||||| | |||||||||
Sbjct 2924 AAAGGACTTTGAAAAGAGAGTCAAAGAGTGCTTGAAATTGCCGGGAGGGAAGCG 2871
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079971128300
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |