Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq1039 260 4e-67 seq1042 167 6e-39 >seq1039 Length=107091 Score = 260 bits (288), Expect = 4e-67 Identities = 304/408 (75%), Gaps = 2/408 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || |||| ||||||||| ||||||||| ||||||||||||||||||| || ||| ||| Sbjct 79721 TATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGC 79780 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| |||||| | |||||||||||||| | ||| || | ||| | ||| Sbjct 79781 AAGCGTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTAAAAAGTCTTCTGT 79840 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||| | |||||||||| || ||| | ||| | ||||||| || || Sbjct 79841 CAAAGATCAGGGCTTAACCCTGGGCCGGCAGGAGAAACTCTTAGGCTAGAGTTTGGTAGG 79900 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || | |||||||| ||| ||| |||||||||||||| || ||||||||||||| || Sbjct 79901 GGCAGAGGGAATTCCCGGTGGAGCGGTGAAATGCGTAGAGATCGGGAGGAACACCAAAGG 79960 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 |||| ||| | ||||| | |||||| || | ||||||||| |||||||||| | Sbjct 79961 CGAAAGCACTCTGCTGGGCCACAACTGACACTGAGAGACGAAAGCGAGGGGAGCAAAAGG 80020 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGA-TTTAC 361 |||||||||||| ||||||| |||| |||||||| ||||| |||||| | ||| Sbjct 80021 GATTAGATACCCCTGTAGTCCTCGCCGTAAACGATGGATACTAGATGTTGGATAGGTTAA 80080 Query 362 TTCCTT-GGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATA 408 | || ||| ||||||||||||||||||| ||||||||||| || Sbjct 80081 AGCATTCAGTATCGTAGCTAACGCGTGAAGTATCCCGCCTGGGGAGTA 80128 >seq1042 Length=398099 Score = 167 bits (184), Expect = 6e-39 Identities = 234/327 (72%), Gaps = 1/327 (0%) Strand=Plus/Plus Query 12 AATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAA 71 || ||| ||||| || | |||||||||||||||||||||||| || |||||||||| Sbjct 7902 AAAAAGTCCCGGCCAATTTCGTGCCAGCAGCCGCGGTAATACGAGAGGGGCAAGCGTTAT 7961 Query 72 TCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCCC 131 ||||||| | ||||||||||||| || |||| ||| | || || ||| | | Sbjct 7962 TCGGAATGATTGGGCGTAAAGCGCACGTAGGCTGTTTAGAAAATCAAAAACAAAAAACTC 8021 Query 132 GGGCTTAACCTGGGA-ATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTG 190 || || || | | ||| ||| | | ||| ||||| || ||||| | || Sbjct 8022 AAAGTTGTGCTTTGACACTTGTTTTCTGATTCCTAAACTTGAGTGAGTAAGAGGAGAATG 8081 Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250 ||||||| | |||| || |||| || ||||| ||||||||| ||| ||||||||| Sbjct 8082 GAATTCCTGGCGTAGAGGTAAAATTTGTTGATATCAGGAGGAACATCAAAAGCGAAGGCA 8141 Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310 | |||| | ||||||| | | | ||| |||||||||| |||| ||||||||| Sbjct 8142 ATTCTCTGGTACTCTACTGACGTTGAGGTGCGACAGCGTGGGGATCAAAAGGGATTAGAT 8201 Query 311 ACCCTGGTAGTCCACGCCCTAAACGAT 337 |||| |||||||||||| | |||||| Sbjct 8202 ACCCCTGTAGTCCACGCCGTCAACGAT 8228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289582641984