Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1042 105 9e-21 >seq1042 Length=398099 Score = 105 bits (116), Expect = 9e-21 Identities = 168/236 (71%), Gaps = 15/236 (6%) Strand=Plus/Plus Query 8 TTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACCTG 67 ||||| ||||||||||| ||||| || ||||| ||| ||||| ||| ||| | |||| Sbjct 29601 TTCCAGCACCGGGCAGGTGTCAGACCCTATACGTCGTGTTACCA-CTTAGCAGAGTCCTG 29659 Query 68 TGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACGTC 127 |||||||||||||||||||| ||| || || | || ||| | | || Sbjct 29660 TGTTTTTAGTAAACAGTCGCCACCCCCTTTTTTGTG---------CCACATAGATTTGT- 29709 Query 128 GTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTA 187 ||||| | | || | | |||| | |||||||||||| | | |||||||| |||||| Sbjct 29710 GTTCA--ACCTATGTC-CTCCTTTTTCCGAAGTTACGGAGGTAATTTGCCGAGTTCCTTC 29766 Query 188 ACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTA 243 | || ||| | | | |||||||| || || || | ||||| ||||||||||| Sbjct 29767 AACATGATTCTCTC-TAGGCCTTAGTTTTTTCAACAAGTCCACCAGTGTCGGTTTA 29821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694390945458