Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq1042 214 5e-53 seq66 118 3e-24 seq1344 98.7 3e-18 >seq1042 Length=398099 Score = 214 bits (236), Expect = 5e-53 Identities = 217/286 (76%), Gaps = 19/286 (7%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||| | || ||||||||||||||| | ||||||||||| | |||| Sbjct 29394 GCATCTTCACGGAGAATTCAATTTCACTGAGATCATGTTGGAGACAGCGGGGAAGTCGTG 29453 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || |||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 29454 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 29513 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT--------TCGCG------- 177 |||||||||||||||||| ||| ||| || |||||| || || Sbjct 29514 GAGTTACGGCCGCCGTTTACTGGGCCTTGCATTGAGAGCTTGTTCAAATCCCGAGAACAG 29573 Query 178 ----TTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACG 233 | | | ||||| | |||| |||| |||||||||||| |||| |||||||||| Sbjct 29574 GTTCTGAACGCACCCCTCCTGTTAAGTTTCCAGCACCGGGCAGGTGTCAGACCCTATACG 29633 Query 234 TCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 || || | || ||||||| ||||||||||| ||||||||||| Sbjct 29634 TCGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAGTAAACAGTCGC 29679 >seq66 Length=1359931 Score = 118 bits (130), Expect = 3e-24 Identities = 74/79 (94%), Gaps = 2/79 (3%) Strand=Plus/Plus Query 74 CGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 133 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1157419 CGCCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA- 1157477 Query 134 TGTTACGGCCGCCGTTTAC 152 ||||||||||||| |||| Sbjct 1157478 -GTTACGGCCGCCGGTTAC 1157495 >seq1344 Length=3331 Score = 98.7 bits (108), Expect = 3e-18 Identities = 78/94 (83%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||||||| ||||||| ||| |||||| Sbjct 846 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCTGATCGTT 905 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAA 106 ||||| ||||||| |||||||||||||||||||| Sbjct 906 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAA 939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260783029632