Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015-
11-03] 1,346 sequences; 56,992,954 total letters
Query= AAMG01000636.1
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
seq1042 214 5e-53
seq66 118 3e-24
seq1344 98.7 3e-18
>seq1042
Length=398099
Score = 214 bits (236), Expect = 5e-53
Identities = 217/286 (76%), Gaps = 19/286 (7%)
Strand=Plus/Plus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||| | || ||||||||||||||| | ||||||||||| | ||||
Sbjct 29394 GCATCTTCACGGAGAATTCAATTTCACTGAGATCATGTTGGAGACAGCGGGGAAGTCGTG 29453
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 29454 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 29513
Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT--------TCGCG------- 177
|||||||||||||||||| ||| ||| || |||||| || ||
Sbjct 29514 GAGTTACGGCCGCCGTTTACTGGGCCTTGCATTGAGAGCTTGTTCAAATCCCGAGAACAG 29573
Query 178 ----TTAGCTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACG 233
| | | ||||| | |||| |||| |||||||||||| |||| ||||||||||
Sbjct 29574 GTTCTGAACGCACCCCTCCTGTTAAGTTTCCAGCACCGGGCAGGTGTCAGACCCTATACG 29633
Query 234 TCCACTTTCGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279
|| || | || ||||||| ||||||||||| |||||||||||
Sbjct 29634 TCGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAGTAAACAGTCGC 29679
>seq66
Length=1359931
Score = 118 bits (130), Expect = 3e-24
Identities = 74/79 (94%), Gaps = 2/79 (3%)
Strand=Plus/Plus
Query 74 CGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 133
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1157419 CGCCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA- 1157477
Query 134 TGTTACGGCCGCCGTTTAC 152
||||||||||||| ||||
Sbjct 1157478 -GTTACGGCCGCCGGTTAC 1157495
>seq1344
Length=3331
Score = 98.7 bits (108), Expect = 3e-18
Identities = 78/94 (83%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72
|||||||||||| || || ||||||| ||||||| ||||||| ||| ||||||
Sbjct 846 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCTGATCGTT 905
Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAA 106
||||| ||||||| ||||||||||||||||||||
Sbjct 906 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAA 939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1260783029632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |