Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq1042 210 5e-52 seq66 113 1e-22 seq1344 111 3e-22 >seq1042 Length=398099 Score = 210 bits (232), Expect = 5e-52 Identities = 274/377 (73%), Gaps = 28/377 (7%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | ||||||||| ||| || | ||||||| | || |||| Sbjct 29394 GCATCTTCACGGAGAATTCAATTTCACTGAGATCATGTTGGAGACAGCGGGGAAGTCGTG 29453 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || || ||| ||| |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 29454 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 29513 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTT----------CGA----TT 172 ||||||||||||||||||||||| ||| || | |||| ||| Sbjct 29514 GAGTTACGGCCGCCGTTTACTGGGCCTTGCATTGAGAGCTTGTTCAAATCCCGAGAACAG 29573 Query 173 GCTCT-AACAGA----TCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACA 227 | ||| ||| | ||| |||| ||||||||||||||||| ||||| ||||||| Sbjct 29574 GTTCTGAACGCACCCCTCCTGTTAAGTTTCCAGCACCGGGCAGGTGTCAGACCCTATACG 29633 Query 228 TCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTC 287 |||| || | |||||||||| ||||||||||| |||||||||||| ||| || | Sbjct 29634 TCGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAGTAAACAGTCGCCACCCCCTTTTTTG 29693 Query 288 TGC------GGCCTGTCATAGAC--AGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTT 339 ||| | ||| | || | | | |||| | || ||||||||| | | ||| Sbjct 29694 TGCCACATAGATTTGTGTTCAACCTATGTCCTCCTTTTTCCGAAGTTACGGAGGTAATTT 29753 Query 340 GCCGAGTTCCTT-AACA 355 |||||||||||| |||| Sbjct 29754 GCCGAGTTCCTTCAACA 29770 >seq66 Length=1359931 Score = 113 bits (124), Expect = 1e-22 Identities = 74/81 (91%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 68 CGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 127 |||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1157419 CGCCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT--C 1157476 Query 128 AGTTACGGCCGCCGTTTACTG 148 |||||||||||||| |||||| Sbjct 1157477 AGTTACGGCCGCCGGTTACTG 1157497 >seq1344 Length=3331 Score = 111 bits (122), Expect = 3e-22 Identities = 81/94 (86%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | |||||||||||| |||||| Sbjct 846 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCTGATCGTT 905 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAA 100 |||||||||||||||||||||||||||||||||| Sbjct 906 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAA 939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062385700096