Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015-
11-03] 1,346 sequences; 56,992,954 total letters
Query= AAMG01000753.1
Length=364
Score E
Sequences producing significant alignments: (Bits) Value
seq1042 210 5e-52
seq66 113 1e-22
seq1344 111 3e-22
>seq1042
Length=398099
Score = 210 bits (232), Expect = 5e-52
Identities = 274/377 (73%), Gaps = 28/377 (7%)
Strand=Plus/Plus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
|||||||||| | || | ||||||||| ||| || | ||||||| | || ||||
Sbjct 29394 GCATCTTCACGGAGAATTCAATTTCACTGAGATCATGTTGGAGACAGCGGGGAAGTCGTG 29453
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126
|| || ||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 29454 ACACCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTCA 29513
Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTT----------CGA----TT 172
||||||||||||||||||||||| ||| || | |||| |||
Sbjct 29514 GAGTTACGGCCGCCGTTTACTGGGCCTTGCATTGAGAGCTTGTTCAAATCCCGAGAACAG 29573
Query 173 GCTCT-AACAGA----TCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACA 227
| ||| ||| | ||| |||| ||||||||||||||||| ||||| |||||||
Sbjct 29574 GTTCTGAACGCACCCCTCCTGTTAAGTTTCCAGCACCGGGCAGGTGTCAGACCCTATACG 29633
Query 228 TCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTC 287
|||| || | |||||||||| ||||||||||| |||||||||||| ||| || |
Sbjct 29634 TCGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAGTAAACAGTCGCCACCCCCTTTTTTG 29693
Query 288 TGC------GGCCTGTCATAGAC--AGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTT 339
||| | ||| | || | | | |||| | || ||||||||| | | |||
Sbjct 29694 TGCCACATAGATTTGTGTTCAACCTATGTCCTCCTTTTTCCGAAGTTACGGAGGTAATTT 29753
Query 340 GCCGAGTTCCTT-AACA 355
|||||||||||| ||||
Sbjct 29754 GCCGAGTTCCTTCAACA 29770
>seq66
Length=1359931
Score = 113 bits (124), Expect = 1e-22
Identities = 74/81 (91%), Gaps = 2/81 (2%)
Strand=Plus/Plus
Query 68 CGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTAT 127
|||| ||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1157419 CGCCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT--C 1157476
Query 128 AGTTACGGCCGCCGTTTACTG 148
|||||||||||||| ||||||
Sbjct 1157477 AGTTACGGCCGCCGGTTACTG 1157497
>seq1344
Length=3331
Score = 111 bits (122), Expect = 3e-22
Identities = 81/94 (86%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66
|||||||||| | || | |||||||||||||| | |||||||||||| ||||||
Sbjct 846 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCTGATCGTT 905
Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAA 100
||||||||||||||||||||||||||||||||||
Sbjct 906 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAA 939
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1062385700096
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |