Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1039 434 3e-119 seq1042 264 3e-68 >seq1039 Length=107091 Score = 434 bits (480), Expect = 3e-119 Identities = 397/494 (80%), Gaps = 23/494 (5%) Strand=Plus/Plus Query 7 CGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTT 66 |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 80133 CGCAAGAGTGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCATGTGGTT 80192 Query 67 TAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT-CCTCTGACCCCTCTAGAG 125 |||||||| ||||||||||||||||||||| |||||||| || || || || | Sbjct 80193 TAATTCGATGCAACGCGAAGAACCTTACCAGGACTTGACATGCCACTTTTTCC-CT---G 80248 Query 126 ATAGAGGT--TTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTC 183 | || || ||||| | ||||| |||||| ||||||| |||||||||||| Sbjct 80249 AAAGGGGAAGTTCCCGA---GTGGACA------CAGGTGGTGCATGGCTGTCGTCAGCTC 80299 Query 184 GTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCAT 243 ||||| ||||||||||||||||||||||||||||||||||||||| | | ||||||| Sbjct 80300 GTGTCTTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTGTTTTGAATTGCCAT 80359 Query 244 CATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGAC 303 ||| || | || || ||||||||||||||| ||||||||||||| ||| ||| Sbjct 80360 TATTG----GGAAATTCAAAA--GACTGCCGGTGACAAGCCGGAGGAAGGTGAGGATGAC 80413 Query 304 GTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAA 363 ||||| ||| ||||||||||| | ||||| |||||||||||||||||| | ||||| Sbjct 80414 GTCAAGTCAGCATGCCCCTTACGTCCTGGGCGACACACGTGCTACAATGGCCGGGACAAA 80473 Query 364 GGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAG 423 | | || || |||||||| | ||| || | || ||| | ||||||||||||||| || Sbjct 80474 GAGATGCAAACCCGCGAGGGCTAGCCAACCTCAAAAACCCGGTCTCAGTTCGGATTGCAG 80533 Query 424 TCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGG 482 |||||||||| || |||||| ||||||||||||||||| || |||| ||| || ||| Sbjct 80534 GCTGCAACTCGCCTGCATGAAGTCGGAATCGCTAGTAATCGCAGGTCAGCCATACTGCGG 80593 Query 483 TGAATACGTTCCCG 496 |||||||||||||| Sbjct 80594 TGAATACGTTCCCG 80607 >seq1042 Length=398099 Score = 264 bits (292), Expect = 3e-68 Identities = 368/511 (72%), Gaps = 25/511 (5%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| | |||||||||||||| ||||||| | | |||||| |||||| ||| Sbjct 8366 TACGGTCGCAAGACTAAAACTCAAAGGAATAGACGGGGGCTCACACAAGTGGTGGAACAT 8425 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTG------A 114 ||||||||||||||| ||||||| | |||||||||| |||||||| ||| | Sbjct 8426 GTGGTTTAATTCGAAACAACGCGCAAAACCTTACCAGTCCTTGACATAGTCTTTTTACAA 8485 Query 115 CCCCTCTAGAGATAGAGGT------TTCCCC---TTCGGGGGAC-AGAG-TGACAGGTGA 163 | |||| | ||||| | ||| || || |||| | || | ||||||| Sbjct 8486 TCTCTCTCTATCTAGAGATAATCTCTTCACCATTTTGAAGGGAGTAAAGATTACAGGTGT 8545 Query 164 TGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAA 223 ||||||| ||||||||| |||||| |||| ||||||| |||| | || ||||| || || Sbjct 8546 TGCATGGCTGTCGTCAGTTCGTGTTGTGAAATGTTGGATTAATTTCCTTAACGAACGAAA 8605 Query 224 CCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCT---AAGTTGA----CTGCCGGT 276 ||| | | | || | ||| ||| | || | || | || | || ||| Sbjct 8606 CCCCTCTTTTCA-TTCAAAACATGAAGAATGTTTCTGTTTTAAATGGAAAGACAGCTGGT 8664 Query 277 GACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTA 336 || | || |||||||| |||| ||||||| || ||||| |||||||| ||||||| Sbjct 8665 GATAGACTAGAGGAAGGGAGGGATCACGTCAAGTCCTCATGACCCTTATGGGCTGGGCTA 8724 Query 337 CACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCA 396 |||||||| |||||||| | |||||| | ||| | | ||| |||||||| || Sbjct 8725 CACACGTGTTACAATGGTGAGGACAAAGAGGAGCAATGATGAGAGTCGGAGCAAATCTCA 8784 Query 397 TAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCT 456 ||| | | |||||| |||||| |||||||||||| | ||||||| |||||| || Sbjct 8785 AAAAACTCACCCCAGTTCAGATTGTTCTCTGCAACTCGAGAACATGAAGCCGGAATCACT 8844 Query 457 AGTAATCGTAGATCAGCATGCTACGGTGAAT 487 ||||||||| |||||||| || ||||||||| Sbjct 8845 AGTAATCGTGGATCAGCACGCCACGGTGAAT 8875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503979756160