Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq1344 212 1e-52 seq1042 132 9e-29 >seq1344 Length=3331 Score = 212 bits (234), Expect = 1e-52 Identities = 183/227 (81%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 113 GACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGC 172 |||||| |||| |||||||||||||||||||||| ||||| ||| |||||||||| | Sbjct 657 GACAGTTTCAGGTGGGCAGTTTGACTGGGGCGGTCACCTCCTAAAAGGTAACGGAGGTGT 598 Query 173 CCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTT 232 ||||| | ||||||| |||| ||||| || || | |||| ||||||| ||||| | | Sbjct 597 GCAAAGGTTCCCTCAGGCTGGACGGAAATCAGCCGTAGAGTGTAAAGGCAGAAGGGAGCT 538 Query 233 TGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGC 292 ||||||| | ||| |||||| ||||||| |||||| ||| |||| ||||||| |||| | Sbjct 537 TGACTGCAAGACCTACAAGTCGAGCAGGGGCGAAAGCCGGCCTTAGTGATCCGACGGTTC 478 Query 293 TGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 477 CATGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 431 >seq1042 Length=398099 Score = 132 bits (146), Expect = 9e-29 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 ||||||||| | ||| |||||||||||||||||||| ||| ||||||||||||| | Sbjct 29221 GGGACAGTGGTAAATGGGTAGTTTGACTGGGGCGGTCGCTTCCTAAAGAGTAACGGAAGT 29162 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 | | ||| || |||| |||| ||||| || | | || | || || | ||| || Sbjct 29161 GTGCGAAGGTAAGCTCAAGCTGGACGGAAATCAGCTGGAGAGCGTAATGGTAGAAGCTTG 29102 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 |||||| | || |||||| ||||| |||||||||||| | || ||| |||| || Sbjct 29101 CCTGACTGTAAGACTTACAAGTCAAGCAGAGACGAAAGTCGGCCATAGTGACCCGGGAGT 29042 Query 291 GCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGAT 338 || ||||| ||| ||| || |||||| |||| ||| || ||||| Sbjct 29041 TCTTGGTGGAAAGGCTCTCGATCAACGGATCAAAGGTACGCTAGGGAT 28994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982386776896