Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1039 228 2e-57 seq1042 201 2e-49 >seq1039 Length=107091 Score = 228 bits (252), Expect = 2e-57 Identities = 254/335 (76%), Gaps = 12/335 (4%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| || || ||||| | | |||||||||||| || ||||||||||||||| Sbjct 79690 TTTACAACCCATAGGCCTTCATCCTT-CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCA 79633 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || ||||| |||||||||||||||||||||||||| |||||||||||| ||||| Sbjct 79632 TTGCGGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGT 79573 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 181 ||| ||||||||||||||||||||| ||| |||| |||||||||| |||| ||||| ||| Sbjct 79572 GTGGCTGATCATCCTCTCAGACCAGCTACTGATCATCGCCTTGGTAAGCCTTTACCCCAC 79513 Query 182 CAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTT 241 ||||||||||||| | | | || ||||| | ||| | | || | || Sbjct 79512 CAACTAGCTAATCAGCCGCAAGCCCATCTCTTGGCGATTGTTC-----ATCATTTAACTT 79458 Query 242 CTCCCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCAGG 301 ||| || | || | ||||||||| ||||||| | ||| |||| | | | ||| Sbjct 79457 CTC----AGCA-TTACGAGGTATTAGCCATCGTTTCCAATGGTTGTCCCTCTCCAAAAGG 79403 Query 302 CAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 || ||| || | ||||||||||||||||| ||| Sbjct 79402 TAGGTTCTTACGTGTTACTCACCCGTCCGCCACTC 79368 >seq1042 Length=398099 Score = 201 bits (222), Expect = 2e-49 Identities = 173/211 (82%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGACCTTCTT--TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCC 59 ||||||| | || || |||| |||| |||||| || | |||||||||||||||||| Sbjct 7863 TTTACAACC--AACACAGTCTTCATCACCCACGCGATATAG-CTGGATCAGGCTTTCGCC 7807 Query 60 CATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 119 |||||||||| ||||| |||||||||| | || | | |||||| |||||||||||| ||| Sbjct 7806 CATTGTCCAAGATTCCTCACTGCTGCCGCTCGAAAGCGTCTGGGCCGTGTCTCAGTCCCA 7747 Query 120 GTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTC 179 ||||| ||||||||||||||||||||| || ||||| | | |||||| || ||||| | Sbjct 7746 GTGTGGCTGATCATCCTCTCAGACCAGCTAAGGATCTTTGGCTTGGTAGGCTTTTACCCC 7687 Query 180 ACCAACTAGCTAATCCGACCTAGGCTCATCT 210 |||||||| ||||||| || | |||||||| Sbjct 7686 ACCAACTACCTAATCCTACGCAAGCTCATCT 7656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071985570880