Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1344 183 1e-43 seq1042 111 6e-22 >seq1344 Length=3331 Score = 183 bits (202), Expect = 1e-43 Identities = 210/282 (74%), Gaps = 23/282 (8%) Strand=Plus/Plus Query 324 CGCCCTATTCGGACTCGCTTTCGCTACGGCTACCCCACACGGGT---TAACCTCGCGACA 380 |||||||||| |||| ||||||||| ||||| || | || | |||||| || || Sbjct 2527 CGCCCTATTCAGACTTGCTTTCGCTTCGGCT-CCGGATACATTTCCTTAACCTTGCCACG 2585 Query 381 CAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGC 440 | || |||| |||||||||||||| |||||||| |||| || Sbjct 2586 TTTT-CTAAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCA---------------GC 2629 Query 441 ACTTCAGC---TCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCCCCGCC 497 ||| ||| ||| || | |||| ||| | ||||||| || |||||||||||||| | Sbjct 2630 GCTTTAGCGCCTCCCACTGGTTGTCAGCATAGGGTTTCATGTTCTATTTCACTCCCCTAC 2689 Query 498 AGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATT 557 |||||| ||||||||||||||||||||||||| | |||||||||||||| ||||||||| Sbjct 2690 AGGGGTTCTTTTCACCTTTCCCTCACGGTACTATTTCGCTATCGGTCACCTAGGAGTATT 2749 Query 558 TAGGCTTAACGGGTGGTCCCGCCAGATTCACACGAAATTTCA 599 ||| |||| |||||||| | |||||||||| |||||| Sbjct 2750 TAGCCTTACGAGGTGGTCCTCGCTGATTCACACGGGATTTCA 2791 >seq1042 Length=398099 Score = 111 bits (122), Expect = 6e-22 Identities = 311/476 (65%), Gaps = 45/476 (9%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||| ||| |||||| || |||||||||| | ||| | ||||||| |||| Sbjct 30554 ACGCTCTACCTCAATAGATTTCGCAGAAAACCAGCTATTTCCAAGCTCGATTGGCTTTTC 30613 Query 195 ACCCC-TATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGC 253 ||||| || |||| ||||||||| || | || | ||||||||||||||||| Sbjct 30614 ACCCCATAATCACAAGTCATCCCCATCTATTGCCACAGATGTGGGTTCGGTCCTCCAAAA 30673 Query 254 GGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC---TTGA- 309 || ||| | |||||||||| |||| |||||| ||| | |||||||| || | Sbjct 30674 CGTATTATCATTTTTTCAACCTGCTCATGATTAGATCGCTTGGTTTCGGGTCAAATTTAT 30733 Query 310 --------TCGTGCC---------ACTCATAC--GCCCTA--------TTCGGACTCGCT 342 | || | || ||| | | | || ||| || ||| Sbjct 30734 GAAACTTTTTGTTTCCCAAAAAATACACATTCTGGGCTTATGCTTTTTTTCAAGCTTGCT 30793 Query 343 TTCGCTACGGCTACCCCACACGGGTTAACCTCGCGACACAACGCAAACTCGCAGGCTCAT 402 ||| || || || | | |||| || || || || |||||| | | ||| Sbjct 30794 TTCACTCCGCCTCCGTTTCTGAACTTAAGCTGGCTTCATAA-ATTTACTCGCTGACCCAT 30852 Query 403 TCTTCAAAAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTA 462 | | ||||||| |||||||||| | | |||| |||| |||| | ||||| Sbjct 30853 TATGCAAAAGGTACGCCGTCAC--TCTTCATAAA---------AGCTTCGACTGCTTGTA 30901 Query 463 GGCACATGGTTTCAGGTACTATTTCAC-TCCCCGCCAGGGGTACTTTTCACCTTTCCCTC 521 ||| |||||||| || |||||| ||| ||| || ||||||||||||||| Sbjct 30902 AGCATTCAGTTTCAGGATCTCTTTCACTTCCTATTTAGGAGTCTGTTTCACCTTTCCCTC 30961 Query 522 ACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCC 577 ||||||||||| | |||||| ||| | |||||||||||| |||||||||| Sbjct 30962 ACGGTACTTGTTCACTATCGATCAGAAGACTATATTTAGGCTTAGAGGGTGGTCCC 31017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817575535104