Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= AAMG01001432.1 Length=344 Score E Sequences producing significant alignments: (Bits) Value seq1039 239 9e-61 seq1042 167 5e-39 >seq1039 Length=107091 Score = 239 bits (264), Expect = 9e-61 Identities = 238/305 (78%), Gaps = 15/305 (5%) Strand=Plus/Minus Query 1 GGCGTCGCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAG 60 ||| | ||| | ||||| |||| ||||||| | || || || |||||||||||||||||| Sbjct 79659 GGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCTCACTGCTGCCTCCCGTAG 79600 Query 61 GAGTCTGGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGAT 120 ||||||||||||||||||||||||| |||||| | ||| |||||||| || ||||| ||| Sbjct 79599 GAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTACTGAT 79540 Query 121 CGTCGGCTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCTTTCA 180 | ||| |||||| || ||| | ||||||||| |||||| ||||| ||||||||| | Sbjct 79539 CATCGCCTTGGTAAGCCTTTACCCCACCAACTAGCTAATCAGCCGCAAGCCCATCTCTTG 79480 Query 181 GCGATAAATCTTTGGTCAAAGAATGATGCCA-TCCTCTGACATTATGCGGTATTAGCGTT 239 |||| ||| || || || | | ||| | ||||| | ||||||||| | Sbjct 79479 GCGA-------TTGTTC-----ATCATTTAACTTCTCAG-CATTACGAGGTATTAGCCAT 79433 Query 240 CGTTTCCAAACGTTATTCCACTCTGAAAGGCAGGTTGCTCACGTGTTACTCACCCGTCCG 299 ||||||||| ||| | || ||| ||||| ||||| || |||||||||||||||||||| Sbjct 79432 CGTTTCCAATGGTTGTCCCTCTCCAAAAGGTAGGTT-CTTACGTGTTACTCACCCGTCCG 79374 Query 300 CCACT 304 ||||| Sbjct 79373 CCACT 79369 >seq1042 Length=398099 Score = 167 bits (184), Expect = 5e-39 Identities = 139/170 (82%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 7 GCTGCATCAGGGTTTCCCCCATTGTGCAATATCCCCCACTGCTGCCTCCCGTAGGAGTCT 66 |||| |||||| |||| |||||||| ||| || || |||||||||| | || | | |||| Sbjct 7825 GCTGGATCAGGCTTTCGCCCATTGTCCAAGATTCCTCACTGCTGCCGCTCGAAAGCGTCT 7766 Query 67 GGGCCGTGTCTCAGTCCCAATGTGGCCGTTCAACCTCTCAGTCCGGCTACCGATCGTCGG 126 ||||||||||||||||||| |||||| | ||| |||||||| || |||| |||| | || Sbjct 7765 GGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCAGACCAGCTAAGGATCTTTGG 7706 Query 127 CTTGGTGGGCTATTATCTCACCAACTACCTAATCGGCCGCGAGCCCATCT 176 |||||| |||| ||| | |||||||||||||||| ||| ||| ||||| Sbjct 7705 CTTGGTAGGCTTTTACCCCACCAACTACCTAATCCTACGCAAGCTCATCT 7656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 998386561536