Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq1039 109 5e-22 seq1042 96.9 3e-18 >seq1039 Length=107091 Score = 109 bits (120), Expect = 5e-22 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| || ||||||| ||| || ||| || | || ||| ||||||||| Sbjct 80544 CGAGTTGCAGCCTGCAATCCGAACTGAGACCGGGTTTTTGAGGTTGGCTAGCCCTCGCGG 80485 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 ||| || | || ||| |||||||| ||||||| |||| | |||||| ||| Sbjct 80484 GTTTGCATCTCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCCCAGGACGTAAGGGGCAT 80425 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | ||||||||||||||| ||||||||||||| ||||||| Sbjct 80424 GCTGACTTGACGTCATCCTCACCTTCCTCCGGCTTGTCAC 80385 >seq1042 Length=398099 Score = 96.9 bits (106), Expect = 3e-18 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||| |||||| | ||| | | ||| || |||| ||||| ||| | Sbjct 8823 TCGAGTTGCAGAGAACAATCTGAACTGGGGTGAGTTTTTTGAGATTTGCTCCGACTCTCA 8764 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | || | || ||| ||||||||| ||||||| ||||| |||||||||| || Sbjct 8763 TCATTGCTCCTCTTTGTCCTCACCATTGTAACACGTGTGTAGCCCAGCCCATAAGGGTCA 8704 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||| ||||| |||||||| || | |||| Sbjct 8703 TGAGGACTTGACGTGATCCCTCCCTTCCTCTAGTCTATCAC 8663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415994575620