Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015-
11-03] 1,346 sequences; 56,992,954 total letters
Query= AAMG01001844.1
Length=290
Score E
Sequences producing significant alignments: (Bits) Value
seq1039 190 3e-46
seq1042 109 9e-22
>seq1039
Length=107091
Score = 190 bits (210), Expect = 3e-46
Identities = 216/290 (74%), Gaps = 0/290 (0%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60
||| |||||||| ||||| ||||||| | |||||| || |||||| ||||||
Sbjct 80010 CCCTCGCTTTCGTCTCTCAGTGTCAGTTGTGGCCCAGCAGAGTGCTTTCGCCTTTGGTGT 79951
Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120
|||||| || |||||||||||||||||| ||| |||||||| |||| || | ||
Sbjct 79950 TCCTCCCGATCTCTACGCATTTCACCGCTCCACCGGGAATTCCCTCTGCCCCTACCAAAC 79891
Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180
|| || || |||||| ||| ||| ||||| ||||| | ||| ||| ||||
Sbjct 79890 TCTAGCCTAAGAGTTTCTCCTGCCGGCCCAGGGTTAAGCCCTGATCTTTGACAGAAGACT 79831
Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240
| || |||||| | |||||| |||||| | |||||||||||||||| ||| |
Sbjct 79830 TTTTAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTG 79771
Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290
| ||||||||||||||||||| ||||||||| ||||||||||||| ||
Sbjct 79770 TCTTACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATA 79721
>seq1042
Length=398099
Score = 109 bits (120), Expect = 9e-22
Identities = 206/298 (69%), Gaps = 25/298 (8%)
Strand=Plus/Minus
Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGT-CCAGCAATCCGCCTTCGCCACTGGTG 59
|||||||| |||| ||||| ||||||| | || |||| | |||||||| || ||
Sbjct 8183 CCCACGCTGTCGCACCTCAACGTCAGT-AGAGTACCAGAGAATTGCCTTCGCTTTTGATG 8125
Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119
||||||| ||||| || |||| ||| |||| | |||||||| | ||||| ||
Sbjct 8124 TTCCTCCTGATATCAACAAATTTTACCTCTACGCCAGGAATTCCATTCTCCTCTTACTCA 8065
Query 120 CTCAAGA-----------AAAACA-GTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTT 167
|||||| |||||| || ||||| ||| | | ||||| | |||
Sbjct 8064 CTCAAGTTTAGGAATCAGAAAACAAGTGTCAAA-GCA--CAACT--TTGAGTTTTTTGTT 8010
Query 168 TTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACG 227
|| ||| || | | |||||| || |||||| |||||| | |||| ||||||
Sbjct 8009 TT------TGATTTTCTAAACAGCCTACGTGCGCTTTACGCCCAATCATTCCGAATAACG 7956
Query 228 CTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285
|||||| | |||||||||||||||||||||||| | || |||| | ||| || |||
Sbjct 7955 CTTGCCCCTCTCGTATTACCGCGGCTGCTGGCACGAAATTGGCCGGGACTTTTTTCTC 7898
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 828789192966
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |