Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq1039 190 3e-46 seq1042 109 9e-22 >seq1039 Length=107091 Score = 190 bits (210), Expect = 3e-46 Identities = 216/290 (74%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 ||| |||||||| ||||| ||||||| | |||||| || |||||| |||||| Sbjct 80010 CCCTCGCTTTCGTCTCTCAGTGTCAGTTGTGGCCCAGCAGAGTGCTTTCGCCTTTGGTGT 79951 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||||| || |||||||||||||||||| ||| |||||||| |||| || | || Sbjct 79950 TCCTCCCGATCTCTACGCATTTCACCGCTCCACCGGGAATTCCCTCTGCCCCTACCAAAC 79891 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACT 180 || || || |||||| ||| ||| ||||| ||||| | ||| ||| |||| Sbjct 79890 TCTAGCCTAAGAGTTTCTCCTGCCGGCCCAGGGTTAAGCCCTGATCTTTGACAGAAGACT 79831 Query 181 TGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACG 240 | || |||||| | |||||| |||||| | |||||||||||||||| ||| | Sbjct 79830 TTTTAAGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTG 79771 Query 241 TATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 | ||||||||||||||||||| ||||||||| ||||||||||||| || Sbjct 79770 TCTTACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTCAGATA 79721 >seq1042 Length=398099 Score = 109 bits (120), Expect = 9e-22 Identities = 206/298 (69%), Gaps = 25/298 (8%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGT-CCAGCAATCCGCCTTCGCCACTGGTG 59 |||||||| |||| ||||| ||||||| | || |||| | |||||||| || || Sbjct 8183 CCCACGCTGTCGCACCTCAACGTCAGT-AGAGTACCAGAGAATTGCCTTCGCTTTTGATG 8125 Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 ||||||| ||||| || |||| ||| |||| | |||||||| | ||||| || Sbjct 8124 TTCCTCCTGATATCAACAAATTTTACCTCTACGCCAGGAATTCCATTCTCCTCTTACTCA 8065 Query 120 CTCAAGA-----------AAAACA-GTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTT 167 |||||| |||||| || ||||| ||| | | ||||| | ||| Sbjct 8064 CTCAAGTTTAGGAATCAGAAAACAAGTGTCAAA-GCA--CAACT--TTGAGTTTTTTGTT 8010 Query 168 TTCACATCTGACTTGCCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACG 227 || ||| || | | |||||| || |||||| |||||| | |||| |||||| Sbjct 8009 TT------TGATTTTCTAAACAGCCTACGTGCGCTTTACGCCCAATCATTCCGAATAACG 7956 Query 228 CTTGCCACCTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 |||||| | |||||||||||||||||||||||| | || |||| | ||| || ||| Sbjct 7955 CTTGCCCCTCTCGTATTACCGCGGCTGCTGGCACGAAATTGGCCGGGACTTTTTTCTC 7898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828789192966