Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq1344 262 6e-68 seq1042 206 4e-51 >seq1344 Length=3331 Score = 262 bits (290), Expect = 6e-68 Identities = 224/275 (81%), Gaps = 1/275 (0%) Strand=Plus/Plus Query 2 GAGGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAG 61 |||| ||||||| ||||||||| |||||| |||||| ||| || | ||| ||||| Sbjct 106 GAGGTGGGCTTCCCACTTAGATGCTTTCAGCGGTTATCCACTCCGCACATGGCTACCCAG 165 Query 62 C-TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTA 120 | | | | |||||| | ||||||| ||||||||| |||| ||| |||||||||||| Sbjct 166 CGTGTACCATTGGCATGATAACTGGTATACCAGAGGTGCGTCCTTCCAGGTCCTCTCGTA 225 Query 121 CTAAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCG 180 ||| ||| ||||||||||| || ||||| || |||||| ||||||||||||||| Sbjct 226 CTATGGAAGGCTCCTCTCAATGCTCTAACGCCTACACCGGATATGGACCGAACTGTCTCA 285 Query 181 CGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGAC 240 |||||||||||||||||||| ||| || |||| ||||||||||||||||||||||||||| Sbjct 286 CGACGTTCTGAACCCAGCTCACGTACCGCTTTCATGGGCGAACAGCCCAACCCTTGGGAC 345 Query 241 CTACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 |||| | |||||||| || || |||||||||||| Sbjct 346 GTACTACCGCCCCAGGTTGCGATGAGCCGACATCG 380 >seq1042 Length=398099 Score = 206 bits (228), Expect = 4e-51 Identities = 205/262 (78%), Gaps = 4/262 (2%) Strand=Plus/Plus Query 16 GCTT-AGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGC 74 |||| |||||| |||||| || | | |||| ||| ||||| |||||| |||| |||||| Sbjct 27671 GCTTGAGATGCTTTCAGCAGTTCTGCATTCCGAACGTAGCTACCCAGCGATGCCCTTGGC 27730 Query 75 AGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCC 134 || ||||||||| ||||||||||| ||| || |||||||||||||| | || || | Sbjct 27731 AGGACAACTGGTACACCAGAGGTTCGTCATTCTCGGTCCTCTCGTACAAGAGAATGCCAC 27790 Query 135 TCTCAAATTTCCTACG-CCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAAC 193 ||||| ||| ||| ||| | |||||| ||| |||||||| |||||| || ||| Sbjct 27791 CCTCAATTTT--TACCACCCGAAAAAGATAGGATCCGTACTGTCTCACGACGTACTAAAC 27848 Query 194 CCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCC 253 ||| ||| ||| || |||| || ||||||||||| ||||||| | |||| ||||||| | Sbjct 27849 CCAACTCACGTACCGCTTTCATCGGCGAACAGCCGAACCCTTCGAACCTTCTTCAGCTCG 27908 Query 254 AGGATGAGACGAGCCGACATCG 275 |||||| || ||| |||||||| Sbjct 27909 AGGATGCGATGAGTCGACATCG 27930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780789818856