Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1039 271 2e-70 seq1042 187 6e-45 >seq1039 Length=107091 Score = 271 bits (300), Expect = 2e-70 Identities = 315/417 (76%), Gaps = 27/417 (6%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 |||||||||| |||||||| || | |||||||||| ||| | |||||||| |||||||| Sbjct 79690 TTTACAACCCATAGGCCTTCATCCTTCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATT 79631 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || ||||| |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct 79630 GCGGAAAATTCCTCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT 79571 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCA 184 ||||| |||||||||||||||||||| |||| |||||| ||| ||| ||||||| ||| Sbjct 79570 GGCTGATCATCCTCTCAGACCAGCTACTGATCATCGCCTTGGTAAGCCTTTACCCCACCA 79511 Query 185 ACTAGCTAATCCCATCTG--GGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTT 242 |||||||||| || | | | |||| | || ||| || | || || Sbjct 79510 ACTAGCTAAT--CAGCCGCAAGCCCATC---TCTTG------GCGATTGT--TCATCATT 79464 Query 243 GGTCTT-GCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAG 301 ||| | | ||| | ||||||||||| |||||||| ||||| |||| ||||| || Sbjct 79463 TAACTTCTCAGCATTACGAGGTATTAGCCATCGTTTCCAATGGTTGTCCCTCTCCAAAAG 79404 Query 302 GCAGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAA--GCAGCAAGC--TG 357 | || ||| | ||||||||||||||||||||| | | || |||||| Sbjct 79403 GTAGGTTCTTACGTGTTACTCACCCGTCCGCCACTCATTA---AATTTTGGCAAGCCAAA 79347 Query 358 CTTCCTGTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||| | ||| |||||||||||||||| || ||||||||||||||| ||||| Sbjct 79346 ATTCAT----TCGTACGACTTGCATGTGTTAAGCATGCCGCCAGCGTTCATCCTGAG 79294 >seq1042 Length=398099 Score = 187 bits (206), Expect = 6e-45 Identities = 147/176 (84%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 21 CTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCAC 80 |||| ||| |||||| || |||| ||||||||| |||||||||| ||| ||||| ||| Sbjct 7846 CTTCATCACCCACGCGATATAGCTGGATCAGGCTTTCGCCCATTGTCCAAGATTCCTCAC 7787 Query 81 TGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTC 140 ||||||| | || | | |||||| |||||||||||| |||||||||||| |||||||||| Sbjct 7786 TGCTGCCGCTCGAAAGCGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTC 7727 Query 141 AGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATCC 196 |||||||||| ||||| | | || ||| ||| ||||||| ||||||| ||||||| Sbjct 7726 AGACCAGCTAAGGATCTTTGGCTTGGTAGGCTTTTACCCCACCAACTACCTAATCC 7671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222383546496