Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1039 336 7e-90 seq1042 223 1e-55 >seq1039 Length=107091 Score = 336 bits (372), Expect = 7e-90 Identities = 281/342 (82%), Gaps = 3/342 (1%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 ||| ||||||||||||||||| ||||| ||||||||||||||| |||||||||| | | Sbjct 79494 GCGGCTGATTAGCTAGTTGGTGGGGTAAAGGCTTACCAAGGCGATGATCAGTAGCTGGTC 79553 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||||| |||||| ||| |||||||||||| ||| |||||||||||||||||| Sbjct 79554 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAGC 79613 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||| ||||| || | |||||||| ||||||||| | ||||| ||||||||| |||||| Sbjct 79614 AGTGAGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGAAGGATGAA 79673 Query 341 GGCCTTCGGGTCGTAAAGCTCTGTCCTCAAGGAAGA--TAATGACGGTACTTGAGGAGGA 398 ||||| |||| ||||| ||| | |||| ||||| | |||||||| |||||| | Sbjct 79674 GGCCTATGGGTTGTAAACTTCTTTTCTCAGAGAAGAATTCTTGACGGTATCTGAGGAATA 79733 Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458 ||| ||||||||| ||||||||||||||||||| || ||| || |||||||||||| Sbjct 79734 AGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGG 79793 Query 459 AATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||| | | |||||||||| || |||||||| || ||||| Sbjct 79794 AATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTAAAAAGTC 79834 >seq1042 Length=398099 Score = 223 bits (246), Expect = 1e-55 Identities = 252/334 (75%), Gaps = 3/334 (1%) Strand=Plus/Plus Query 161 GCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACC 220 |||| |||||| |||||||| ||||| || ||||||| | | |||| |||| | | Sbjct 7666 GCGTAGGATTAGGTAGTTGGTGGGGTAAAAGCCTACCAAGCCAAAGATCCTTAGCTGGTC 7725 Query 221 TGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGC 280 ||||||| ||||| |||||| ||| |||||||||||| ||| || | | || | |||||| Sbjct 7726 TGAGAGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACGCTTTCGAGCGGCAGC 7785 Query 281 AGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAA 340 |||| ||||| ||| ||||||||| |||||||||| |||| | |||||| | |||||| Sbjct 7786 AGTGAGGAATCTTGGACAATGGGCGAAAGCCTGATCCAGCTATATCGCGTGGGTGATGAA 7845 Query 341 GGC-CTTCGGGTCGTAAAGCTCTGT-CCTCAAGGAAGATAATGACGGTACTTGAGGAGGA 398 | | | ||| ||||| | || | | || | |||| ||||| ||| | | Sbjct 7846 GACTGTGTTGGTTGTAAAACCCTTTACTTCTTGAGAGATTATGACAAACAAGGAGAAAAA 7905 Query 399 AGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGG 458 || |||||| || | |||||||||||||||||||||||| ||||| |||||||| ||| Sbjct 7906 AGTCCCGGCCAATTTCGTGCCAGCAGCCGCGGTAATACGAGAGGGGCAAGCGTTATTCGG 7965 Query 459 AATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTT 492 ||| | | |||||||||| | |||||| |||| Sbjct 7966 AATGA-TTGGGCGTAAAGCGCACGTAGGCTGTTT 7998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497579842304