Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq1039 288 2e-75 seq1042 174 4e-41 >seq1039 Length=107091 Score = 288 bits (318), Expect = 2e-75 Identities = 306/404 (76%), Gaps = 0/404 (0%) Strand=Plus/Plus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 |||||| |||| ||||||||| ||||||||||||||||||| || ||| || ||| Sbjct 79725 TGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGC 79784 Query 65 GTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAA 124 |||||||||||| | ||||||||||| || |||||||| || ||||| || ||| Sbjct 79785 GTTATCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTAAAAAGTCTTCTGTCAAA 79844 Query 125 GGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCA 184 | | |||| ||||| ||| | || |||||| ||||||||| | ||||||| Sbjct 79845 GATCAGGGCTTAACCCTGGGCCGGCAGGAGAAACTCTTAGGCTAGAGTTTGGTAGGGGCA 79904 Query 185 AGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAA 244 |||||||| ||| |||||||||||||||||| || |||||||||||| |||||| Sbjct 79905 GAGGGAATTCCCGGTGGAGCGGTGAAATGCGTAGAGATCGGGAGGAACACCAAAGGCGAA 79964 Query 245 GGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATT 304 || |||||| | ||||||||||||| |||||||| |||||||||| ||||| Sbjct 79965 AGCACTCTGCTGGGCCACAACTGACACTGAGAGACGAAAGCGAGGGGAGCAAAAGGGATT 80024 Query 305 AGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTGC 364 |||||||| ||||||| |||||||||||||| ||||||| ||| || | ||| Sbjct 80025 AGATACCCCTGTAGTCCTCGCCGTAAACGATGGATACTAGATGTTGGATAGGTTAAAGCA 80084 Query 365 TCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 | | || || ||| ||||| |||||| || ||||||||||| Sbjct 80085 TTCAGTATCGTAGCTAACGCGTGAAGTATCCCGCCTGGGGAGTA 80128 >seq1042 Length=398099 Score = 174 bits (192), Expect = 4e-41 Identities = 237/327 (72%), Gaps = 3/327 (1%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 ||| |||||| || | |||||||||||||||||||||||| ||||| |||||||| || Sbjct 7905 AAGTCCCGGCCAATTTCGTGCCAGCAGCCGCGGTAATACGAGAGGGGCAAGCGTTATTCG 7964 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCT-ATG 131 |||| | ||||||||||| | |||||| |||| || ||| | ||| || | Sbjct 7965 GAATGATTGGGCGTAAAGCGCACGTAGGCTGTTTAGAAAATCAAAAACAAAAAACTCAAA 8024 Query 132 GCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAA 191 | | | | ||| |||| | | | || ||||| || || | ||||| Sbjct 8025 GTTGTGCTTTGACACTTGTTTTCTGATTCCTAAACTTGAGTGAGTAAGAGGAGAATGGAA 8084 Query 192 TTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCT 251 ||||| | |||| ||| |||| || ||||| |||||||||| || |||||||| | Sbjct 8085 TTCCTGGCGTAGAGGTAAAATTTGTTGATATCAGGAGGAACATCAAAAGCGAAGGCAATT 8144 Query 252 TGCTGG-ACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATAC 310 |||| ||| || ||||| ||||| ||| |||||||||| |||| ||||||||||| Sbjct 8145 CTCTGGTACTCTA-CTGACGTTGAGGTGCGACAGCGTGGGGATCAAAAGGGATTAGATAC 8203 Query 311 CCTGGTAGTCCACGCCGTAAACGATGA 337 || |||||||||||||| |||||||| Sbjct 8204 CCCTGTAGTCCACGCCGTCAACGATGA 8230 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203183804928