Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq1344 141 2e-31 seq1042 91.5 3e-16 >seq1344 Length=3331 Score = 141 bits (156), Expect = 2e-31 Identities = 181/243 (74%), Gaps = 11/243 (5%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||| ||| ||| || || ||||||||| ||| | | | ||| | ||| |||| Sbjct 3203 GGTGGATACCTAGGCACCTAGAGACGATGAAGGGCGTGGAACCGA-CGAAACGCTTCGGG 3145 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTTTGGGT 129 ||| | ||||| | ||||||| ||||| |||||| ||| |||| ||| || Sbjct 3144 GAGCTGG-AAACAAGCAATGATCCGGAGATTCCCGAATAGGGCAACCT----CTT---GT 3093 Query 130 CATTGCATGCTGAATACATAGGTATGCAA-AGCGAACGCGGCGAACTGAAACATCTAAGT 188 || | |||||| ||||||| | || || ||| | | |||||||||||||| ||| Sbjct 3092 ACTTCTAA-CTGAATTCATAGGTTAGAAAGAGGCAACTCAGTGAACTGAAACATCTTAGT 3034 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAATGGGATGAG 248 ||||| ||||||||||| ||| || ||||||| |||||||||||||||||||||| || Sbjct 3033 AGCTGAAGGAAAAGAAAGCAAACGCGATTCCCTGAGTAGTGGCGAGCGAAATGGGAACAG 2974 Query 249 CCT 251 ||| Sbjct 2973 CCT 2971 >seq1042 Length=398099 Score = 91.5 bits (100), Expect = 3e-16 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 171 GAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGG 230 ||||||||||||||||||| || ||||||| ||||||||||||||||| |||||||| Sbjct 31292 GAACTGAAACATCTAAGTAACTAGAGGAAAAAAAATCAACCGAGATTCCGTGAGTAGTGG 31233 Query 231 CGAGCGAAATGGGATGAG 248 |||||||| |||| || Sbjct 31232 TGAGCGAAAGCGGATTAG 31215 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918387638336