Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq1042 170 7e-40 seq1344 158 4e-36 seq66 104 8e-20 >seq1042 Length=398099 Score = 170 bits (188), Expect = 7e-40 Identities = 383/572 (67%), Gaps = 24/572 (4%) Strand=Plus/Plus Query 3 GACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAA 62 ||||||||||||| |||||| || ||| | | |||| ||| ||| |||||| || Sbjct 29079 GACTTGTAAGTCTTACAGTCAGGCAAGCTTCTACCATTACGCTCTCCAGCTGATTTCCGT 29138 Query 63 CCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTT 122 |||| |||| ||||| | | | |||||||| ||| ||| | | ||||||||||| Sbjct 29139 CCAGCTTGAGCTTACCTTCGCACACTTCCGTTACTCTTTAGGAAG-CGACCGCCCCAGTC 29197 Query 123 AAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCACTA 182 |||||||||| ||||||||| ||| | ||||||||| | | Sbjct 29198 AAACTACCCATTTACCACTGTCCCTTTTTTTATTCAAG----AAGGTTAGAAAAATGAGA 29253 Query 183 CGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATAGTCT 242 | || ||||||||||| || | | | | || | | | | | | Sbjct 29254 AAGAAAGGGTGGTATTTCATTGT----TC----ATCTTTTTAGAGGTCTAAAAAGA-TGT 29304 Query 243 CCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCCCG- 301 ||||||||| ||||||| | | | |||| || ||||||| ||||| | Sbjct 29305 CCCACCTATTCTACACATTCAAACTCTTTTTTCAATGGTAAACTATAGTAAAGGTGCATA 29364 Query 302 GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCGGG 361 ||||||| |||| || ||| ||||||| || | | ||||||||| | | Sbjct 29365 GGGTCTTACCGTCTACTTTCGGGAACTCCGCATCTTCACGGAGAATTCAATTTCACTGAG 29424 Query 362 CCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGA 421 || | |||||||| ||| |||||| || |||||| ||||||||||||||||||||| Sbjct 29425 ATCATGTTGGAGACAGCGGGGAAGTCGTGACACCATTCATGCAGGTCGGAACTTACCCGA 29484 Query 422 CAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAA 481 ||||||||||||||||||||||| || | |||||| ||||||||||||||| ||| | Sbjct 29485 CAAGGAATTTCGCTACCTTAGGACCGTCAGAGTTACGGCCGCCGTTTACTGGGCCTTGCA 29544 Query 482 TTACCCGCCT---------CACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCC 532 || || | | | | || || || | ||| |||| |||| |||| Sbjct 29545 TTGAGAGCTTGTTCAAATCCCGAGAACAGGTTCTGAACGCACCCCTCCTGTTAAGTTTCC 29604 Query 533 AGCACCGGGCAGGCGTCAGTCCGTATACCTCG 564 ||||||||||||| ||||| || ||||| ||| Sbjct 29605 AGCACCGGGCAGGTGTCAGACCCTATACGTCG 29636 >seq1344 Length=3331 Score = 158 bits (174), Expect = 4e-36 Identities = 301/432 (70%), Gaps = 15/432 (3%) Strand=Plus/Plus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 |||||||||| |||| |||||||||||||||| ||| |||||||| | |||||| || Sbjct 515 TCGACTTGTAGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTACACTCTACGGCTGATTTCC 574 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 |||| ||||||||||||||| | |||||||||| |||| ||| || |||||||||| Sbjct 575 GTCCAGCCTGAGGGAACCTTTGCACACCTCCGTTACCTTTTAGGA-GGTGACCGCCCCAG 633 Query 121 TTAAACTACCCACCAGGCACTGTC-CCCAACCCAGATCATGG---GCCAAGGTTAGATAT 176 | ||||| |||||| | |||||| | || ||| || |||| ||||| | Sbjct 634 TCAAACTGCCCACCTGAAACTGTCAAGCGTCCTGCTTCAAGGAACGCCA---TTAGAATT 690 Query 177 CCACTACGGTCAGAGTGGTATTTCAACAACGACTCCA-CAACCACTAGCGTGGCCGCATC 235 | | | ||||||||| | ||| | | ||||| | | | || | | | || Sbjct 691 CTAGCTCCTCCAGAGTGGTCTCTCACTGATGGCTCCAGCTTTCCCAAGAGAAAAC-CTTC 749 Query 236 ATAGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGA 293 | | |||||||||| || | || || || ||||| ||||| |||||||| ||| | Sbjct 750 AACGCCTCCCACCTAGGCTGCGCAAGAAGAGC-CCGAA-CCCAATTCCAAGCTACAGTCA 807 Query 294 AG-GTCCCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAAT 352 || || |||||||| |||| | || | | ||||||| || | | || Sbjct 808 AGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTAT 867 Query 353 TTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAA 412 ||||||| | || | ||||||| |||||||||| ||||||| |||||||| Sbjct 868 TTCACCGAGTCTCTCTCCGAGACAGTGCCCTGATCGTTACGCCTTTCGTGCGGGTCGGAA 927 Query 413 CTTACCCGACAA 424 |||||||||||| Sbjct 928 CTTACCCGACAA 939 >seq66 Length=1359931 Score = 104 bits (114), Expect = 8e-20 Identities = 72/81 (89%), Gaps = 2/81 (2%) Strand=Plus/Plus Query 392 CGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTAT 451 |||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1157419 CGCCATTCATGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT--C 1157476 Query 452 AGTTACCACCGCCGTTTACTG 472 |||||| |||||| |||||| Sbjct 1157477 AGTTACGGCCGCCGGTTACTG 1157497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702377085696