Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_031903.1 Length=172345 Score E Sequences producing significant alignments: (Bits) Value seq1307 401 7e-107 >seq1307 Length=2189 Score = 401 bits (444), Expect = 7e-107 Identities = 513/702 (73%), Gaps = 11/702 (2%) Strand=Plus/Minus Query 161839 ATTGGATTCATGCTTCGTCAGTTTGAACTTGCTCGTCTTATCGGTA----TCCGTCCTTA 161894 ||||| || |||||||||||||||||| |||| ||| |||||| | ||||| || Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGT----TCGGTAAAAATTCGTCCATA 2134 Query 161895 CAATGCTATTGCTTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTTCTCATATATCC 161954 || || ||||| ||||| | ||| ||| |||| || || || || | || ||||| Sbjct 2133 TAACGCGATTGCATTCTCAGCTCCAATTTCTGTATTCGTTTCTGTATTCTTAATTTATCC 2074 Query 161955 TCTGGGACAGTCGTCCTGGTTCTTCGCGCCATCGTTTGGGGTTGCCGCTATTTTCAGGTT 162014 | | || || || |||||||| || ||| || || ||||| || |||||| | || Sbjct 2073 TTTAGGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATT 2014 Query 162015 CTTACTTTTCCTACAAGGTTTCCACAATTGGACGCTTAATCCGTTCCACATGATGGGTGT 162074 | | | ||| | ||||| ||||| || ||||| | || || ||||| ||||||||||| Sbjct 2013 CATTTTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGT 1954 Query 162075 CGCAGGTATCTTGGGTGGTGCTTTGCTCTCTGCTATTCACGGTGTGACTGTTGAAAACAC 162134 || ||| | | || | || || || | ||| |||||||||| |||||||||||||| Sbjct 1953 TGCCGGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACAC 1894 Query 162135 GCTCTACCAAGATGGTGAACAAGCAAATACTTTCAAGGCTTTTGACTCTACGCAAGAGGA 162194 ||| | |||||||||| ||||| || ||| || ||| || | || |||| || Sbjct 1893 GCTTTTTGAAGATGGTGATGGTGCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGA 1834 Query 162195 GGAGACTTACTCGATGGTTACTGCGAACCGTTTCTGGTCACAGATCTTCGGTATTGCTTT 162254 || ||||| || |||||||| || ||||||||||||||||| || || ||| | ||||| Sbjct 1833 AGAAACTTATTCAATGGTTACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTT 1774 Query 162255 TAGTAATAAGCGTTGGTTGCATTTCTTTATGCTCTTCGTTCCCGTCATGGGTCTCTGGAC 162314 | || || |||||||| || ||||||||||| || ||||| || | ||||| |||| Sbjct 1773 TTCAAACAAACGTTGGTTACACTTCTTTATGCTATTTGTTCCAGTAACTGGTCTTTGGAT 1714 Query 162315 AAGTTCTATCGGTATTATTGGACTCGCTCTTAATCTT-CGTGCTTACGACTTTGTATCTC 162373 ||| | || ||| | | || | ||| |||| ||| ||||| || || || || || | Sbjct 1713 GAGTGCAATTGGTGTAGTAGGTTTAGCT-TTAAACTTACGTGCGTATGATTTCGTTTCAC 1655 Query 162374 AGGAGATTCGTGCAGCGGAGGATCCTGAATTTGAAACCTTCTACACCAAGAATATCCTCT 162433 | || ||||| || ||||| || ||||| |||||||| ||||| || || ||||| || | Sbjct 1654 AAGAAATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTTCTATACAAAAAATATTCTTT 1595 Query 162434 TGAATGAAGGTCTTCGTGCATGGTTGGCACCAGTTGATCAACCGCATGAGAACTTTGTAT 162493 | || |||||| ||||||| ||| |||| | ||||| || ||||| || | |||| Sbjct 1594 TAAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTAGTAT 1535 Query 162494 TCCCTGAGGAAGTTCTGCCTAGAGGTAACGCACTGTGAATGG 162535 |||||||||| ||| | || | || ||||| || | ||||| Sbjct 1534 TCCCTGAGGAGGTTTTACCACGTGGAAACGCTCT-TTAATGG 1494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551366723098800