Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20pyrenoidosa_20[genbank_20GCA_5F001430745.1_202015- 11-03] 1,346 sequences; 56,992,954 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq1307 414 1e-110 >seq1307 Length=2189 Score = 414 bits (458), Expect = 1e-110 Identities = 508/693 (73%), Gaps = 8/693 (1%) Strand=Plus/Minus Query 190311 ATTGGATTCATGCTTCGTCAGTTTGAACTGGCACGTCTCATCGGTA----TCCGTCCTTA 190366 ||||| || |||||||||||||||||| | || ||| |||||| | ||||| || Sbjct 2189 ATTGGTTTTATGCTTCGTCAGTTTGAAATTGCGCGT----TCGGTAAAAATTCGTCCATA 2134 Query 190367 CAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCC 190426 || || ||||| ||||| | ||| || |||| || ||| || || | || || || Sbjct 2133 TAACGCGATTGCATTCTCAGCTCCAATTTCTGTATTCGTTTCTGTATTCTTAATTTATCC 2074 Query 190427 TCTGGGTCAATCGAGTTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGATCTTCCGCTT 190486 | | |||||||| |||||||||| || ||| ||||| || || || || ||||| || Sbjct 2073 TTTAGGTCAATCTGGTTGGTTCTTTGCACCAAGTTTCGGCGTTGCTGCAATTTTCCGATT 2014 Query 190487 CCTCCTCTTCTTGCAGGGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATGGGTGT 190546 | | | ||||| || || |||||||||||||| | ||||| ||||| ||||||||||| Sbjct 2013 CATTTTATTCTTCCAAGGATTCCATAACTGGACTTTAAACCCTTTCCATATGATGGGTGT 1954 Query 190547 TGCAGGTATCCTGGGAGGAGCACTACTGTCAGCAATCCATGGTGTGACTGTAGAGAATAC 190606 ||| ||| | || |||| |||| |||| | ||||| || |||| ||||| || || || Sbjct 1953 TGCCGGTGTACTTGGAGCAGCATTACTTTGTGCAATTCACGGTGCAACTGTTGAAAACAC 1894 Query 190607 TTTGTATGAAGATGGTGAACAAGCAAACACGTTTAAAGCATTCGACTCTACACAAGAGGA 190666 | | |||||||||||| |||||||| || || || || | ||||||| || Sbjct 1893 GCTTTTTGAAGATGGTGATGGTGCAAACACATTCCGTGCGTTTAACCCAACACAAGCTGA 1834 Query 190667 AGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTTGGTGTTGCGTT 190726 ||| || ||||| ||||| || || |||||||||||||| ||||| |||||||| || || Sbjct 1833 AGAAACTTATTCAATGGTTACAGCAAACCGTTTCTGGTCACAAATTTTTGGTGTAGCTTT 1774 Query 190727 CAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATGGGTCTGTGGAC 190786 || || | ||||| || ||||||||||| |||||||| || | ||||| |||| Sbjct 1773 TTCAAACAAACGTTGGTTACACTTCTTTATGCTATTTGTTCCAGTAACTGGTCTTTGGAT 1714 Query 190787 TTCTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCA 190846 | | || ||| | | ||| | ||| | ||| | ||||| ||||| || || || || Sbjct 1713 GAGTGCAATTGGTGTAGTAGGTTTAGCTTTAAACTTACGTGCGTATGATTTCGTTTCACA 1654 Query 190847 AGAGATCAGAGCAGCAGAAGATCCAGAGTTCGAGACTTTTTACACAAAAAATATACTTTT 190906 ||| || | || || ||||| || ||||| || ||||| || ||||||||||| ||||| Sbjct 1653 AGAAATTCGCGCTGCGGAAGACCCTGAGTTTGAAACTTTCTATACAAAAAATATTCTTTT 1594 Query 190907 GAATGAAGGTCTTCGTTCATGGTTGGCACCTGTTGATCAACCCCATGAGAATTTTGTATT 190966 || |||||| ||||| | ||| |||| || ||||| || ||||| || | ||||| Sbjct 1593 AAACGAAGGTATTCGTGCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAACTAGTATT 1534 Query 190967 TCCAGAAGAAGTATTGCCAAGAGGCAACGCTCT 190999 || || || || || ||| | || |||||||| Sbjct 1533 CCCTGAGGAGGTTTTACCACGTGGAAACGCTCT 1501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634069331604000