Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq21 187 6e-45 seq20 109 1e-21 >seq21 Length=72700 Score = 187 bits (206), Expect = 6e-45 Identities = 289/411 (70%), Gaps = 9/411 (2%) Strand=Plus/Minus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||||||||| ||||||||| ||||||||||||||||||| || ||| |||||| | Sbjct 58733 GAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGTG 58674 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAAT 127 ||| ||||||| | ||||||||||| || | |||||||| | ||| | |||||||| Sbjct 58673 TTATTCGGAATGATTGGGCGTAAAGAGTCTGTAGGCGGTTTAGAAAGTCTTTTGTGAAAT 58614 Query 128 CCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGG 187 | ||| ||| || ||| | ||| | |||| ||| ||||| Sbjct 58613 ACTTCAGCTCAACTGAGGCTCCGCAAAAGAAACTTCTAGACTTGAGGAAAGTAGAGGTAC 58554 Query 188 GTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCA--ATGGCGA 245 |||||| | ||| ||| ||||||||||||||||| | |||||||||| ||||||| Sbjct 58553 AGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGATATCGGAAGGAACACCAATATGGCGA 58494 Query 246 AGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGAT 305 ||||| ||||| | |||||||||| |||||||| |||| | ||||| Sbjct 58493 AGGCACTGTACTGGGCTTTTCCTGACGCTCAGAGACGAAAGCTGAAGGAGTGATTAGGAT 58434 Query 306 TAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGG----GATTTAC 361 |||||||||| ||| | ||| |||||||| |||| ||| | | || | Sbjct 58433 TAGATACCCTAGTAATTTCAGCCGTAAACGATGAAAACTCACTGTCGAGCCAATATATGG 58374 Query 362 TTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATACTCC 412 | |||| | ||||||||||||||||| ||||||||||| ||| || Sbjct 58373 AGCGGTGGTCA---AGCTAACGCGTGAAGTTTTCCGCCTGGGGATTACCCC 58326 >seq20 Length=43614 Score = 109 bits (120), Expect = 1e-21 Identities = 229/336 (68%), Gaps = 9/336 (3%) Strand=Plus/Minus Query 9 AAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGT 68 ||||| |||| ||||| || | ||||||||||||||||||| || || || || || Sbjct 16297 AAGAAGAAGCTCCGGCAAATTCTGTGCCAGCAGCCGCGGTAAGACAGGAGGAGCGAGTGT 16238 Query 69 TAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTG--TGTAAGACAGGTGTGAAA 126 || ||| | | | ||||||||||| | | ||| || |||| | ||||||| Sbjct 16237 TATTCGAATTAATTGGGCGTAAAGGGCATGTAGGTGGAGAGATGTA-GTTGTTTGTGAAA 16179 Query 127 -TCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCA----CGACTAGAGTGTGTCAG 181 ||| || || |||| | ||||| ||| | | | ||| |||| || Sbjct 16178 GTCCAAAGGGTTTCTTTGGGTGT-GCATTCAAGACGGTTTCTTCTCTTTGAGGGTGTAAG 16120 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 ||| | ||||| | | | || || |||| | ||||| | | ||||| ||| | Sbjct 16119 AGGAAAATAGAATTTCCAGAGGAGAGGTTAAATTCTTAGATTTTGGAAGGAATACCTAAT 16060 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 ||||||||| |||| | ||||| || | | |||||||| ||||||| |||| Sbjct 16059 GCGAAGGCAATTTTCTGGTGCACTCCTGACACTGAGGTGCGAAAGCGCGGGGAGCGAACA 16000 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||||||||||||| |||| |||||||| Sbjct 15999 GGATTAGATACCCTGGTAGTCCGCGCCTTAAACGAT 15964 Score = 109 bits (120), Expect = 1e-21 Identities = 229/336 (68%), Gaps = 9/336 (3%) Strand=Plus/Plus Query 9 AAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGT 68 ||||| |||| ||||| || | ||||||||||||||||||| || || || || || Sbjct 39145 AAGAAGAAGCTCCGGCAAATTCTGTGCCAGCAGCCGCGGTAAGACAGGAGGAGCGAGTGT 39204 Query 69 TAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTG--TGTAAGACAGGTGTGAAA 126 || ||| | | | ||||||||||| | | ||| || |||| | ||||||| Sbjct 39205 TATTCGAATTAATTGGGCGTAAAGGGCATGTAGGTGGAGAGATGTA-GTTGTTTGTGAAA 39263 Query 127 -TCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCA----CGACTAGAGTGTGTCAG 181 ||| || || |||| | ||||| ||| | | | ||| |||| || Sbjct 39264 GTCCAAAGGGTTTCTTTGGGTGT-GCATTCAAGACGGTTTCTTCTCTTTGAGGGTGTAAG 39322 Query 182 AGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATG 241 ||| | ||||| | | | || || |||| | ||||| | | ||||| ||| | Sbjct 39323 AGGAAAATAGAATTTCCAGAGGAGAGGTTAAATTCTTAGATTTTGGAAGGAATACCTAAT 39382 Query 242 GCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACA 301 ||||||||| |||| | ||||| || | | |||||||| ||||||| |||| Sbjct 39383 GCGAAGGCAATTTTCTGGTGCACTCCTGACACTGAGGTGCGAAAGCGCGGGGAGCGAACA 39442 Query 302 GGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||||||||||||||||| |||| |||||||| Sbjct 39443 GGATTAGATACCCTGGTAGTCCGCGCCTTAAACGAT 39478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289599729184