Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq21 176 1e-41 seq20 154 3e-35 >seq21 Length=72700 Score = 176 bits (194), Expect = 1e-41 Identities = 245/337 (73%), Gaps = 21/337 (6%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCA 61 ||||||| ||| | ||||| | | ||||| || | | || |||| |||||| ||| Sbjct 58770 TTTACAACCCGCTGGCCTTCATCCTT-CACGCAGCGTCG-CTCCGTCAGACTTTCGTCCA 58827 Query 62 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 121 ||| || |||||||||||||||||||||||||||||||| |||||||||||| ||| | Sbjct 58828 TTGCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAAT 58887 Query 122 GTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACC-TCA 180 | ||| |||||||||||||||| ||| |||||||||||||||| ||| ||||| | Sbjct 58888 TTAGCTGTCCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGGGCCCTTACCAACC 58947 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGCAAGGCCCGAAGGTCCCCTGCTT 240 ||| | || ||||| ||| | | || ||| | || |||| | ||| Sbjct 58948 CCACCAAGGTAATCAGACGCAAGATCGTCT-------CTCGG--CGAA------ATTCTT 58992 Query 241 TCTC-CCGTAGGACGTATGCGGTATTAGCGTCCGTTTCCGAACGTTATCCCCCACTACCA 299 || | || || | ||| ||||||||| |||||||| | ||||||||| || | Sbjct 58993 TCACTCCACAG--CATATTGGGTATTAGCTCCCGTTTCCAGAAGTTATCCCCAACCGAAA 59050 Query 300 GGCAGATTCCTAGGCATTACTCACCCGTCCGCCGCTC 336 || |||||| || | || ||||||||| |||| ||| Sbjct 59051 GGTAGATTCTTACGTGTTCCTCACCCGTTCGCCACTC 59087 >seq20 Length=43614 Score = 154 bits (170), Expect = 3e-35 Identities = 162/209 (78%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 2 TTTACAATCCGAAGA-CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||||| | | ||||| | ||| |||||| || | ||||||||||||| ||||| Sbjct 16354 TTTACAATCAATATAACCTTCGT-CACCCACGCGATATAG-CTGGATCAGGCTTGCGCCC 16411 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 | ||||||| ||||| ||||||||||||| | |||| || |||| ||||||| || Sbjct 16412 AGTGTCCAAGATTCCTCACTGCTGCCTCCATCAAGAGTTCGGGCCGTCTCTCAGTCCCGA 16471 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 ||||| || || ||| || |||||| | | |||| ||| |||||| ||| |||||| | Sbjct 16472 TGTGATTGGTCGTCCGCTAAGACCAATGAAAGATCATCGACTTGGTAAGCTTTTACCTTA 16531 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATC 209 ||||||| |||||| || || ||||||| Sbjct 16532 CCAACTATCTAATCTTACGTAAGCTCATC 16560 Score = 154 bits (170), Expect = 3e-35 Identities = 162/209 (78%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 2 TTTACAATCCGAAGA-CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCC 60 ||||||||| | | ||||| | ||| |||||| || | ||||||||||||| ||||| Sbjct 39088 TTTACAATCAATATAACCTTCGT-CACCCACGCGATATAG-CTGGATCAGGCTTGCGCCC 39031 Query 61 ATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 120 | ||||||| ||||| ||||||||||||| | |||| || |||| ||||||| || Sbjct 39030 AGTGTCCAAGATTCCTCACTGCTGCCTCCATCAAGAGTTCGGGCCGTCTCTCAGTCCCGA 38971 Query 121 TGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCA 180 ||||| || || ||| || |||||| | | |||| ||| |||||| ||| |||||| | Sbjct 38970 TGTGATTGGTCGTCCGCTAAGACCAATGAAAGATCATCGACTTGGTAAGCTTTTACCTTA 38911 Query 181 CCAACTAGCTAATCCGACCTAGGCTCATC 209 ||||||| |||||| || || ||||||| Sbjct 38910 CCAACTATCTAATCTTACGTAAGCTCATC 38882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071999774880