Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq21 206 1e-50 seq20 120 1e-24 seq3 75.2 4e-11 >seq21 Length=72700 Score = 206 bits (228), Expect = 1e-50 Identities = 332/467 (71%), Gaps = 20/467 (4%) Strand=Plus/Plus Query 136 CGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCA 195 |||||| ||| || |||||||| ||||||||||||| | | ||||| ||||||| ||||| Sbjct 56555 CGCTGCGCCTCAACGCATTTCGAGGAGAACCAGCTAGCTCCAAGTTCGATTGGCATTTCA 56614 Query 196 CCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGG 255 |||||| ||| | |||||| | |||||||| | || |||||| ||||||| | Sbjct 56615 CCCCTAACCATAACTCATCCGTCGATTTTTCAACATCGGTCGGTTCGAACCTCCACTTCG 56674 Query 256 TCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTCTTGATCGTGC 315 | | ||| |||||| ||| | ||| |||||||| | | ||||||||| || | Sbjct 56675 TATCACCAAAGCTTCATTCTGGTCGTGGTTAGATCACCTGGGTTCGGGTCTAGAAGACGG 56734 Query 316 CACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC-CCCACACGGGTTAACCTC 374 || | ||||||||| ||| ||||||||| |||| | | | ||||||| Sbjct 56735 GACGTGT-TGCCCTATTCAGACATGCTTTCGCTTTGGCTTCGATTAAATATCTTAACCT- 56792 Query 375 GCGACACAACGCAAACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACCTGGTACCTA 434 || || | | || |||| | ||||||||||| ||||| || |||| || Sbjct 56793 GCCACGTCTC-CTAAGTCGCCAGATCATTCTTCAACAGGCATGCGGTCAGATG------- 56844 Query 435 AAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATTTCACTCC-C 493 | | || |||| || |||||| || | ||||||| || |||||||||||| Sbjct 56845 ---TGTTCATC--CTCCCACTAATTGTAAACATACGGTTTCATGTTCTATTTCACTCCAT 56899 Query 494 CGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAG 553 | ||| ||||||| ||||||||| |||||||| | |||||||||| ||| ||||| Sbjct 56900 TTAAAATGGTTCTTTTCATCTTTCCCTCGCGGTACTT-TTCGCTATCGGTGACCTAGGAG 56958 Query 554 TATTTAGGCTTAACGGGTGGTCC-CGCCAGATTCACACGAAATTTCA 599 ||||||| |||| |||||||| ||| | ||||| ||| |||||| Sbjct 56959 TATTTAGTCTTACGAGGTGGTCCTCGCGA-ATTCATACGGGATTTCA 57004 >seq20 Length=43614 Score = 120 bits (132), Expect = 1e-24 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||| ||| |||||| ||||||||||||||| | |||||||||||||||||| Sbjct 14973 ACGCTTTACCTCAATAAATTTCGCGGAGAACCAGCTATCTCTAAGTTTGATTGGCCTTTC 15032 Query 195 ACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCG 254 ||||||| || || ||||| | || |||| | || |||||| |||||| | Sbjct 15033 ACCCCTAGCCTCAACTCATCTGCGTCTATTGCAACAGACGTCAGTTCGGCCCTCCAAAAG 15092 Query 255 GTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 | |||||| ||||| |||| || | |||||||||| | |||||||| Sbjct 15093 CTTTTACCCTTTCTTCAGCCTGTTCAAAGCTAGATCACTTAGTTTCGGGTC 15143 Score = 120 bits (132), Expect = 1e-24 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||| ||| |||||| ||||||||||||||| | |||||||||||||||||| Sbjct 40469 ACGCTTTACCTCAATAAATTTCGCGGAGAACCAGCTATCTCTAAGTTTGATTGGCCTTTC 40410 Query 195 ACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCG 254 ||||||| || || ||||| | || |||| | || |||||| |||||| | Sbjct 40409 ACCCCTAGCCTCAACTCATCTGCGTCTATTGCAACAGACGTCAGTTCGGCCCTCCAAAAG 40350 Query 255 GTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 | |||||| ||||| |||| || | |||||||||| | |||||||| Sbjct 40349 CTTTTACCCTTTCTTCAGCCTGTTCAAAGCTAGATCACTTAGTTTCGGGTC 40299 >seq3 Length=741603 Score = 75.2 bits (82), Expect = 4e-11 Identities = 75/95 (79%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 472 TTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTACTT 530 ||||||||||| ||| |||| | || ||| ||||||| |||||||||||||||||| Sbjct 36853 TTTCAGGTACTTTTTAACTCTCTTTTCAAAGGT-CTTTTCATCTTTCCCTCACGGTACTT 36911 Query 531 GTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 || ||||||||||| | | ||||||| |||| Sbjct 36912 GTTCGCTATCGGTCTCTCGCCAATATTTAGCCTTA 36946 Score = 75.2 bits (82), Expect = 4e-11 Identities = 75/95 (79%), Gaps = 2/95 (2%) Strand=Plus/Minus Query 472 TTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTACTT 530 ||||||||||| ||| |||| | || ||| ||||||| |||||||||||||||||| Sbjct 122987 TTTCAGGTACTTTTTAACTCTCTTTTCAAAGGT-CTTTTCATCTTTCCCTCACGGTACTT 122929 Query 531 GTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 || ||||||||||| | | ||||||| |||| Sbjct 122928 GTTCGCTATCGGTCTCTCGCCAATATTTAGCCTTA 122894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817599618304