Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq21 105 2e-20 seq20 87.8 4e-15 seq3 73.4 1e-10 >seq21 Length=72700 Score = 105 bits (116), Expect = 2e-20 Identities = 129/172 (75%), Gaps = 3/172 (2%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||||||| ||||| |||||||||||| | ||||||||||||| | |||||| Sbjct 56853 CTCCCACTAATTGTAAACATACGGTTTCATGTTCTATTTCACTCCATTTAAAATGGTTCT 56912 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTT-G 368 |||| ||||||||| ||||||| ||| |||||||| | || ||||||||| ||| Sbjct 56913 TTTCATCTTTCCCTCGCGGTACT-TTTCGCTATCGGTGACCTAGGAGTATTTAGTCTTAC 56971 Query 369 GAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 |||| |||||| | | ||||| || |||| |||| || | ||||||| Sbjct 56972 GAGG-TGGTCCTCGCGAATTCATACGGGATTTCACGTGTCCCATACTACTCG 57022 >seq20 Length=43614 Score = 87.8 bits (96), Expect = 4e-15 Identities = 182/265 (69%), Gaps = 7/265 (3%) Strand=Plus/Plus Query 135 ACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTAT-TCGGTTAAGCTTTGCCACT 193 |||| || | | |||||||||| ||| |||||| || ||| |||||| | || | Sbjct 15159 ACGCACTCTTCATACTCGCTTTT-GCTTTGCCTCCACTTCGTCGTTTAAGCCTCGCTTTT 15217 Query 194 GAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCC 253 | | | ||||||||||||||| |||||||||| | | | || | || | | Sbjct 15218 TTTATTTACTCGCTGACCCATTATGCAAAAGGTACACCGACCTCCCGTACAGAGAAAATC 15277 Query 254 CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTC 313 | ||| || | |||||||| ||| ||||||||| | || |||||||| Sbjct 15278 GATTGCATGGTTATTTTTTGTTTCAGGTTCTCTTTCACTCCTTAGTTAAGG-TTCTTTTC 15336 Query 314 GCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAG--TATTTAGCCTTGGAG 371 | |||||||||||||||| ||||||||| ||| ||| || ||||||| | | || Sbjct 15337 ACTTTTCCCTCACGGTACTTGTTCACTATTGGT--TTCAAAAGCATATTTAGACCTAGAA 15394 Query 372 GATGGTCCCCCCATATTCAGACAAA 396 | ||| || || |||||| ||||| Sbjct 15395 GGTGGGCCTCCTGTATTCAAACAAA 15419 Score = 87.8 bits (96), Expect = 4e-15 Identities = 182/265 (69%), Gaps = 7/265 (3%) Strand=Plus/Minus Query 135 ACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTAT-TCGGTTAAGCTTTGCCACT 193 |||| || | | |||||||||| ||| |||||| || ||| |||||| | || | Sbjct 40283 ACGCACTCTTCATACTCGCTTTT-GCTTTGCCTCCACTTCGTCGTTTAAGCCTCGCTTTT 40225 Query 194 GAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCAACAAAGTGGGCTCC 253 | | | ||||||||||||||| |||||||||| | | | || | || | | Sbjct 40224 TTTATTTACTCGCTGACCCATTATGCAAAAGGTACACCGACCTCCCGTACAGAGAAAATC 40165 Query 254 CACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTC 313 | ||| || | |||||||| ||| ||||||||| | || |||||||| Sbjct 40164 GATTGCATGGTTATTTTTTGTTTCAGGTTCTCTTTCACTCCTTAGTTAAGG-TTCTTTTC 40106 Query 314 GCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAG--TATTTAGCCTTGGAG 371 | |||||||||||||||| ||||||||| ||| ||| || ||||||| | | || Sbjct 40105 ACTTTTCCCTCACGGTACTTGTTCACTATTGGT--TTCAAAAGCATATTTAGACCTAGAA 40048 Query 372 GATGGTCCCCCCATATTCAGACAAA 396 | ||| || || |||||| ||||| Sbjct 40047 GGTGGGCCTCCTGTATTCAAACAAA 40023 >seq3 Length=741603 Score = 73.4 bits (80), Expect = 1e-10 Identities = 75/97 (77%), Gaps = 1/97 (1%) Strand=Plus/Plus Query 274 TTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTA 333 ||||||| || ||| |||| | | || ||| |||||| ||||||||||||||||| Sbjct 36853 TTTCAGGTACTTTTTAACTCTCTTTTCAAAGGT-CTTTTCATCTTTCCCTCACGGTACTT 36911 Query 334 GTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 |||| ||||||||| || | ||||||||||| || Sbjct 36912 GTTCGCTATCGGTCTCTCGCCAATATTTAGCCTTAGA 36948 Score = 73.4 bits (80), Expect = 1e-10 Identities = 75/97 (77%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 274 TTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTA 333 ||||||| || ||| |||| | | || ||| |||||| ||||||||||||||||| Sbjct 122987 TTTCAGGTACTTTTTAACTCTCTTTTCAAAGGT-CTTTTCATCTTTCCCTCACGGTACTT 122929 Query 334 GTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGA 370 |||| ||||||||| || | ||||||||||| || Sbjct 122928 GTTCGCTATCGGTCTCTCGCCAATATTTAGCCTTAGA 122892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241599739264