Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq21 154 2e-35 seq20 77.0 5e-12 >seq21 Length=72700 Score = 154 bits (170), Expect = 2e-35 Identities = 206/283 (73%), Gaps = 4/283 (1%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCAC--TGGTGTTCC 63 ||||||| || |||||||| | | |||| | |||||||||| ||||||||| Sbjct 58452 GCTTTCGTCTCTGAGCGTCAGGAAAAGCCCAGTACAGTGCCTTCGCCATATTGGTGTTCC 58511 Query 64 TCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCA 123 | | ||||||||||||||||||||| ||| | |||||| | ||||| | |||| Sbjct 58512 TTCCGATATCTACGCATTTCACCGCTCCACCGGAAATTCCCTGTACCTCTACTTTCCTCA 58571 Query 124 AGAAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGT-TTTCACATCTGACTTG 182 || | |||||| ||| | | ||||||| | ||| ||||||| ||||| Sbjct 58572 AGTCTAGAAGTTTCTTTTGCGGAGCCTCAGTTGAGCTGA-AGTATTTCACAAAAGACTTT 58630 Query 183 CCTTCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTA 242 | ||||||||| | |||||| |||||| | |||| ||||| ||||| ||| || Sbjct 58631 CTAAACCGCCTACAGACTCTTTACGCCCAATCATTCCGAATAACACTTGCATCCTCTGTC 58690 Query 243 TTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||||||||||||||||||| ||||||||| ||||||||||| Sbjct 58691 TTACCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCCTC 58733 >seq20 Length=43614 Score = 77.0 bits (84), Expect = 5e-12 Identities = 198/291 (68%), Gaps = 13/291 (4%) Strand=Plus/Plus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGT-CCAGCAATCCGCCTTCGCCACTGGTG 59 ||| ||||||||| |||||| ||||| | || |||| || |||||||| ||| Sbjct 16009 CCCGCGCTTTCGCACCTCAGTGTCAGG-AGTGCACCAGAAAATTGCCTTCGCATTAGGTA 16067 Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 ||||| | | ||||| | |||| ||| || | | | ||||| || ||||| | Sbjct 16068 TTCCTTCCAAAATCTAAGAATTTAACCTCTCCTCTGGAAATTCTATTTTCCTCTTACACC 16127 Query 120 CTCAA---GAA-AAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGT--TTTCACA 173 ||||| ||| |||| || | |||||| | | | ||| | | ||||||| Sbjct 16128 CTCAAAGAGAAGAAACCGTCTTGAATGCACACCCAAAGA--AACCCTTTGGACTTTCACA 16185 Query 174 TCTGACTTGCCTTC-CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGC 232 ||| || || |||||| ||||||||| |||||| ||| || ||||| || || Sbjct 16186 AACAACTACATCTCTCCACCTACATGCCCTTTACGCCCAATTAATTCGAATAACACTCGC 16245 Query 233 CACCTAC-GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 ||| | || ||||||||||||||||||| | || |||| |||| ||| Sbjct 16246 T-CCTCCTGTCTTACCGCGGCTGCTGGCACAGAATTTGCCGGAGCTTCTTC 16295 Score = 77.0 bits (84), Expect = 5e-12 Identities = 198/291 (68%), Gaps = 13/291 (4%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGT-CCAGCAATCCGCCTTCGCCACTGGTG 59 ||| ||||||||| |||||| ||||| | || |||| || |||||||| ||| Sbjct 39433 CCCGCGCTTTCGCACCTCAGTGTCAGG-AGTGCACCAGAAAATTGCCTTCGCATTAGGTA 39375 Query 60 TTCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCA 119 ||||| | | ||||| | |||| ||| || | | | ||||| || ||||| | Sbjct 39374 TTCCTTCCAAAATCTAAGAATTTAACCTCTCCTCTGGAAATTCTATTTTCCTCTTACACC 39315 Query 120 CTCAA---GAA-AAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGT--TTTCACA 173 ||||| ||| |||| || | |||||| | | | ||| | | ||||||| Sbjct 39314 CTCAAAGAGAAGAAACCGTCTTGAATGCACACCCAAAGA--AACCCTTTGGACTTTCACA 39257 Query 174 TCTGACTTGCCTTC-CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGC 232 ||| || || |||||| ||||||||| |||||| ||| || ||||| || || Sbjct 39256 AACAACTACATCTCTCCACCTACATGCCCTTTACGCCCAATTAATTCGAATAACACTCGC 39197 Query 233 CACCTAC-GTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTC 282 ||| | || ||||||||||||||||||| | || |||| |||| ||| Sbjct 39196 T-CCTCCTGTCTTACCGCGGCTGCTGGCACAGAATTTGCCGGAGCTTCTTC 39147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828799831391