Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq21 212 1e-52 seq20 168 1e-39 >seq21 Length=72700 Score = 212 bits (234), Expect = 1e-52 Identities = 208/263 (79%), Gaps = 4/263 (2%) Strand=Plus/Plus Query 17 CTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC-TATGCACTTGGCA 75 |||| |||| |||||| |||| |||| || ||||| |||||| | | | | |||| Sbjct 54715 CTTATATGCTTTCAGCAGTTATTTACTCCAGACATAGCTACCCAGCGTTTACCCCTGGCG 54774 Query 76 GTACAACTGGTGCACCAGAGGTTTGTCCATCCC-GGTCCTCTCGTACTAAGGACAGCTCC 134 | | ||||||| ||| || ||| ||||| || ||||||||||||| |||| || ||| Sbjct 54775 GAATAACTGGTACACTAGCGGTCTGTCCCCACCTGGTCCTCTCGTACAAAGGGGAGATCC 54834 Query 135 TCTCAAATTTCCTA-CGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAAC 193 | |||| || | |||| || ||||| ||||| ||||||||| ||||||||||||| Sbjct 54835 TTTCAATGCTCTAAACGCCTACACAGGATATGGACCAAACTGTCTCACGACGTTCTGAAC 54894 Query 194 CCAGCTCGCGTGCCTCTTTA-ATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCC 252 ||||||| ||| || |||| |||||||||||||||||||||||| || |||||| || | Sbjct 54895 CCAGCTCACGTACCGCTTTCTATGGGCGAACAGCCCAACCCTTGGAACGTACTTCCGCTC 54954 Query 253 CAGGATGAGACGAGCCGACATCG 275 ||||||| ||||||||||||||| Sbjct 54955 CAGGATGCGACGAGCCGACATCG 54977 >seq20 Length=43614 Score = 168 bits (186), Expect = 1e-39 Identities = 194/257 (75%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 20 AGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTAC 79 |||||| |||| | || ||| || ||| ||||| ||| || |||| |||||||| || Sbjct 13261 AGATGCTTTCAACGGTTCTCCTCTCTCAACGTAGCTACCCGGCAATGCTCTTGGCAGAAC 13320 Query 80 AACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACA-GCTCCTCTC 138 ||| |||||||||||||| | | ||||||||||||||| ||||| | | | |||| Sbjct 13321 AACCAGTGCACCAGAGGTTGAACATTTCCGGTCCTCTCGTAC-AAGGAAATGGTTTTCTC 13379 Query 139 AAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGC 198 || | | | ||| ||| | | ||| || ||||||||| ||||||||| ||| || | Sbjct 13380 AATTCTTCG-CGCGCACCCCAGGTAGAATCCAAACTGTCTCACGACGTTCTAAACTCAAC 13438 Query 199 TCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGAT 258 || || || ||| || ||||||||||| |||||||||||||| |||||||||||||| Sbjct 13439 TCAGGTACCATTTTTATCGGCGAACAGCCGAACCCTTGGGACCTTTTTCAGCCCCAGGAT 13498 Query 259 GAGACGAGCCGACATCG 275 || || | |||||| Sbjct 13499 ATGATCAGTCAACATCG 13515 Score = 168 bits (186), Expect = 1e-39 Identities = 194/257 (75%), Gaps = 3/257 (1%) Strand=Plus/Minus Query 20 AGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTAC 79 |||||| |||| | || ||| || ||| ||||| ||| || |||| |||||||| || Sbjct 42181 AGATGCTTTCAACGGTTCTCCTCTCTCAACGTAGCTACCCGGCAATGCTCTTGGCAGAAC 42122 Query 80 AACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACA-GCTCCTCTC 138 ||| |||||||||||||| | | ||||||||||||||| ||||| | | | |||| Sbjct 42121 AACCAGTGCACCAGAGGTTGAACATTTCCGGTCCTCTCGTAC-AAGGAAATGGTTTTCTC 42063 Query 139 AAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGC 198 || | | | ||| ||| | | ||| || ||||||||| ||||||||| ||| || | Sbjct 42062 AATTCTTCG-CGCGCACCCCAGGTAGAATCCAAACTGTCTCACGACGTTCTAAACTCAAC 42004 Query 199 TCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGAT 258 || || || ||| || ||||||||||| |||||||||||||| |||||||||||||| Sbjct 42003 TCAGGTACCATTTTTATCGGCGAACAGCCGAACCCTTGGGACCTTTTTCAGCCCCAGGAT 41944 Query 259 GAGACGAGCCGACATCG 275 || || | |||||| Sbjct 41943 ATGATCAGTCAACATCG 41927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780799841156