Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq21 208 2e-51 seq20 123 6e-26 >seq21 Length=72700 Score = 208 bits (230), Expect = 2e-51 Identities = 295/411 (72%), Gaps = 23/411 (6%) Strand=Plus/Plus Query 5 TTTACAACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT 64 ||||||||||| ||||||| || | ||||| || | ||| | |||| ||| || ||||| Sbjct 58770 TTTACAACCCGCTGGCCTTCATCCTTCACGCAGCGTCGCTCCGTCAGACTTTCGTCCATT 58829 Query 65 GTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGT 124 | | || |||||||||||||||||||||||||||||||| |||||||||||| ||| | | Sbjct 58830 GCGGAAAATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATTT 58889 Query 125 GGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACC-CCGCC 183 |||| ||||||||||||||||||| ||||||||||| |||||||| ||||| | || Sbjct 58890 AGCTGTCCATCCTCTCAGACCAGCTACTGATCGTCGCCTTGGTGGGCCCTTACCAACCCC 58949 Query 184 AACTAGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTG 243 | | || ||||| | | || | | | | |||| || || Sbjct 58950 ACCAAGGTAATCAGACGCAAGATCGT-CTCTCG--------GCGAAATTC-------TTT 58993 Query 244 GTCTTGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGC 303 || | ||| ||||||||| |||||||||| ||||||||| || ||| Sbjct 58994 CACTCCACAGCATATTGGGTATTAGCTCCCGTTTCCAGAAGTTATCCCCAACCGAAAGGT 59053 Query 304 AGTTTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCT 363 || ||| | || ||||||||| ||||||||||| | || | ||| | ||| Sbjct 59054 AGATTCTTACGTGTTCCTCACCCGTTCGCCACTCGTC--CAAATCCCGAAG--GATTC-- 59107 Query 364 GTTACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 || |||||||||||||||||||| || || |||||||||| |||||| Sbjct 59108 TTTCGCGTTCGACTTGCATGTGTTATGCACGCTGCCAGCGTTCCTTCTGAG 59158 >seq20 Length=43614 Score = 123 bits (136), Expect = 6e-26 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||| ||| |||||| || |||| |||||||||||||||| ||| ||| ||||| || Sbjct 16370 CCTTCGTCACCCACGCGATATAGCTGGATCAGGCTTGCGCCCAGTGTCCAAGATTCCTCA 16429 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 ||||||||||| | |||| || |||| ||||||| || |||| ||||| ||| || Sbjct 16430 CTGCTGCCTCCATCAAGAGTTCGGGCCGTCTCTCAGTCCCGATGTGATTGGTCGTCCGCT 16489 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||||| | |||| ||| || ||| || ||||| ||||||| |||||| Sbjct 16490 AAGACCAATGAAAGATCATCGACTTGGTAAGCTTTTACCTTACCAACTATCTAATC 16545 Score = 123 bits (136), Expect = 6e-26 Identities = 133/176 (76%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||| ||| |||||| || |||| |||||||||||||||| ||| ||| ||||| || Sbjct 39072 CCTTCGTCACCCACGCGATATAGCTGGATCAGGCTTGCGCCCAGTGTCCAAGATTCCTCA 39013 Query 80 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCT 139 ||||||||||| | |||| || |||| ||||||| || |||| ||||| ||| || Sbjct 39012 CTGCTGCCTCCATCAAGAGTTCGGGCCGTCTCTCAGTCCCGATGTGATTGGTCGTCCGCT 38953 Query 140 CAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGCTAATC 195 |||||| | |||| ||| || ||| || ||||| ||||||| |||||| Sbjct 38952 AAGACCAATGAAAGATCATCGACTTGGTAAGCTTTTACCTTACCAACTATCTAATC 38897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222399743296