Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq21 282 1e-73 seq20 127 6e-27 >seq21 Length=72700 Score = 282 bits (312), Expect = 1e-73 Identities = 272/344 (79%), Gaps = 5/344 (1%) Strand=Plus/Minus Query 161 GCGTCTGATTAGCTAGTTGGTAA-GGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 ||||||||||| || | ||| ||||| ||| ||||||||||||||||||||| | Sbjct 58967 GCGTCTGATTACCTTGGTGGGGTTGGTAAGGGCCCACCAAGGCGACGATCAGTAGCTGGT 58908 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 |||||||| || | || | ||||| |||||||||||| ||| ||||||||||||||||| Sbjct 58907 CTGAGAGGATGGACAGCTAAATTGGGACTGAGACACGGCCCAGACTCCTACGGGAGGCAG 58848 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||| | |||| |||| | ||| |||| |||||| ||||| Sbjct 58847 CAGTGGGGAATTTTCCGCAATGGACGAAAGTCTGACGGAGCGACGCTGCGTGAAGGATGA 58788 Query 340 AGGCCTTCGGGTCGTAAAGCTCTGTCCTC-AAG--GAAGATAATGACGGTACTTGAGGAG 396 ||||| ||||| ||||| ||| | ||| ||| ||| | |||||||||| | ||||| Sbjct 58787 AGGCCAGCGGGTTGTAAACTTCTTTTCTCGAAGAAGAAAAAAATGACGGTATTCGAGGAA 58728 Query 397 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456 |||| ||||||||| ||||||||||||||||||| || ||| || || ||||| | Sbjct 58727 TAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGTGTTATTC 58668 Query 457 GGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTC 500 ||||| | | |||||||||| || ||||| ||||| ||||| Sbjct 58667 GGAATGA-TTGGGCGTAAAGAGTCTGTAGGCGGTTTAGAAAGTC 58625 >seq20 Length=43614 Score = 127 bits (140), Expect = 6e-27 Identities = 238/351 (68%), Gaps = 34/351 (10%) Strand=Plus/Minus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| ||||||||||||||| |||||||||| ||| |||| | | || || | Sbjct 16545 GATTAGATAGTTGGTAAGGTAAAAGCTTACCAAGTCGATGATCTTTCATTGGTCTTAGCG 16486 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 | || | ||||| || ||||||| |||| || ||||| | ||||||||||||| | Sbjct 16485 GACGACCAATCACATCGGGACTGAGAGACGGCCCGAACTCTTGATGGAGGCAGCAGTGAG 16426 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG-CCT 345 |||| ||| ||| ||||| ||||||||| |||| | |||||| | || ||||| | Sbjct 16425 GAATCTTGGACACTGGGCGCAAGCCTGATCCAGCTATATCGCGTGGGTGACGAAGGTTAT 16366 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTAC--------TTG------ 391 | | ||||| | || ||| ||| | || ||||||| ||| Sbjct 16365 ATTGATTGTAAAACCCT---TTCATTGAAAAAAA--ACGGTACACCGTTTTTTGGAGACT 16311 Query 392 -------------AGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 438 | || ||||| ||||| || | ||||||||||||||||||| || Sbjct 16310 TTGACATGAATCAAAGAAGAAGCTCCGGCAAATTCTGTGCCAGCAGCCGCGGTAAGACAG 16251 Query 439 AGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 || || || ||||| | |||||| | |||||||||||| |||||||| Sbjct 16250 GAGGAGCGAGTGTTATTC-GAATTAATTGGGCGTAAAGGGCATGTAGGTGG 16201 Score = 127 bits (140), Expect = 6e-27 Identities = 238/351 (68%), Gaps = 34/351 (10%) Strand=Plus/Plus Query 167 GATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAG 226 |||||| ||||||||||||||| |||||||||| ||| |||| | | || || | Sbjct 38897 GATTAGATAGTTGGTAAGGTAAAAGCTTACCAAGTCGATGATCTTTCATTGGTCTTAGCG 38956 Query 227 GGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGG 286 | || | ||||| || ||||||| |||| || ||||| | ||||||||||||| | Sbjct 38957 GACGACCAATCACATCGGGACTGAGAGACGGCCCGAACTCTTGATGGAGGCAGCAGTGAG 39016 Query 287 GAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGG-CCT 345 |||| ||| ||| ||||| ||||||||| |||| | |||||| | || ||||| | Sbjct 39017 GAATCTTGGACACTGGGCGCAAGCCTGATCCAGCTATATCGCGTGGGTGACGAAGGTTAT 39076 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAAGGAAGATAATGACGGTAC--------TTG------ 391 | | ||||| | || ||| ||| | || ||||||| ||| Sbjct 39077 ATTGATTGTAAAACCCT---TTCATTGAAAAAAA--ACGGTACACCGTTTTTTGGAGACT 39131 Query 392 -------------AGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGT 438 | || ||||| ||||| || | ||||||||||||||||||| || Sbjct 39132 TTGACATGAATCAAAGAAGAAGCTCCGGCAAATTCTGTGCCAGCAGCCGCGGTAAGACAG 39191 Query 439 AGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGG 489 || || || ||||| | |||||| | |||||||||||| |||||||| Sbjct 39192 GAGGAGCGAGTGTTATTC-GAATTAATTGGGCGTAAAGGGCATGTAGGTGG 39241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497599685504