Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq21 192 1e-46 seq20 129 1e-27 >seq21 Length=72700 Score = 192 bits (212), Expect = 1e-46 Identities = 287/405 (71%), Gaps = 3/405 (1%) Strand=Plus/Minus Query 6 GAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCG 65 ||||| |||| ||||||||| ||||||||||||||||||| || ||| || || | Sbjct 58733 GAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGTG 58674 Query 66 TTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAG 125 |||| |||||| | ||||||||||| || ||||| ||||| ||||| |||||| Sbjct 58673 TTATTCGGAATGATTGGGCGTAAAGAGTCTGTAGGCGGTTTAGAAAGTCTTTTGTGAAAT 58614 Query 126 GCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAA 185 || ||||||| || | || |||||| | | || ||| || || || | Sbjct 58613 ACTTCAGCTCAACTGAGGCTCCGCAAAAGAAACTTCTAGACTTGAGGAAAGTAGAGGTAC 58554 Query 186 GTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCA--GTGGCGA 243 |||||| | ||| ||||||||||||||||||||| | |||||||||| |||||| Sbjct 58553 AGGGAATTTCCGGTGGAGCGGTGAAATGCGTAGATATCGGAAGGAACACCAATATGGCGA 58494 Query 244 AGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGAT 303 |||| | |||| || | ||||| || || ||||||| |||| | ||||| Sbjct 58493 AGGCACTGTACTGGGCTTTTCCTGACGCTCAGAGACGAAAGCTGAAGGAGTGATTAGGAT 58434 Query 304 TAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCATAAGTG 363 |||||||||| ||| | ||||||||||||||| ||| |||| | || ||| || Sbjct 58433 TAGATACCCTAGTAATTTCAGCCGTAAACGATGAAAACTCACTGTC-GAGCCAATATATG 58375 Query 364 CTCCGGTGCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 ||||| ||| ||||| |||| |||| |||||||| || Sbjct 58374 GAGCGGTGGTCAAGCTAACGCGTGAAGTTTTCCGCCTGGGGATTA 58330 >seq20 Length=43614 Score = 129 bits (142), Expect = 1e-27 Identities = 234/337 (69%), Gaps = 13/337 (4%) Strand=Plus/Minus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || ||||| ||||| || | ||||||||||||||||||| || || || || |||| Sbjct 16295 GAAGAAGCTCCGGCAAATTCTGTGCCAGCAGCCGCGGTAAGACAGGAGGAGCGAGTGTTA 16236 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTA-AGTCAGAGGTGAAAGGC 127 | || | | | ||||||||||||| |||||||| | ||| ||||||| | Sbjct 16235 TTCGAATTAATTGGGCGTAAAGGGCATGTAGGTGGAGAGATGTAGTTGTTTGTGAAAGTC 16176 Query 128 TATGGCTCAACCCCGGGACTGCTTTTGAAACTG---CAGGGCT---AGAGTGCAGGAGGG 181 | | | ||| ||| || | || | | || || ||| | |||| Sbjct 16175 CAAAGGGTTTCTTTGGGTGTGCATTCAAGACGGTTTCTTCTCTTTGAGGGTGTAAGAGGA 16116 Query 182 GCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGC 241 || | ||||| | || | || ||| |||| | ||||| || | ||||| ||| || Sbjct 16115 --AAATAGAATTTCCAGAGGAGAGGTTAAATTCTTAGATTTTGGAAGGAATACCTAATGC 16058 Query 242 GAAGGCGGCTTGCTGGACTGTAA--CTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 |||||| || |||| || | |||||||||||| |||||||| ||||||| |||| Sbjct 16057 GAAGGCAATTTTCTGG--TGCACTCCTGACACTGAGGTGCGAAAGCGCGGGGAGCGAACA 16000 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATG 336 |||||||||||||||||||||| |||| ||||||||| Sbjct 15999 GGATTAGATACCCTGGTAGTCCGCGCCTTAAACGATG 15963 Score = 129 bits (142), Expect = 1e-27 Identities = 234/337 (69%), Gaps = 13/337 (4%) Strand=Plus/Plus Query 9 GAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTA 68 || ||||| ||||| || | ||||||||||||||||||| || || || || |||| Sbjct 39147 GAAGAAGCTCCGGCAAATTCTGTGCCAGCAGCCGCGGTAAGACAGGAGGAGCGAGTGTTA 39206 Query 69 TCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTA-AGTCAGAGGTGAAAGGC 127 | || | | | ||||||||||||| |||||||| | ||| ||||||| | Sbjct 39207 TTCGAATTAATTGGGCGTAAAGGGCATGTAGGTGGAGAGATGTAGTTGTTTGTGAAAGTC 39266 Query 128 TATGGCTCAACCCCGGGACTGCTTTTGAAACTG---CAGGGCT---AGAGTGCAGGAGGG 181 | | | ||| ||| || | || | | || || ||| | |||| Sbjct 39267 CAAAGGGTTTCTTTGGGTGTGCATTCAAGACGGTTTCTTCTCTTTGAGGGTGTAAGAGGA 39326 Query 182 GCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGC 241 || | ||||| | || | || ||| |||| | ||||| || | ||||| ||| || Sbjct 39327 --AAATAGAATTTCCAGAGGAGAGGTTAAATTCTTAGATTTTGGAAGGAATACCTAATGC 39384 Query 242 GAAGGCGGCTTGCTGGACTGTAA--CTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACA 299 |||||| || |||| || | |||||||||||| |||||||| ||||||| |||| Sbjct 39385 GAAGGCAATTTTCTGG--TGCACTCCTGACACTGAGGTGCGAAAGCGCGGGGAGCGAACA 39442 Query 300 GGATTAGATACCCTGGTAGTCCACGCCGTAAACGATG 336 |||||||||||||||||||||| |||| ||||||||| Sbjct 39443 GGATTAGATACCCTGGTAGTCCGCGCCTTAAACGATG 39479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203199747328