Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20prasinos_20[genbank_20GCA_5F002220235.1_202012-11-22] 21 sequences; 15,074,320 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq21 185 3e-44 seq20 120 1e-24 >seq21 Length=72700 Score = 185 bits (204), Expect = 3e-44 Identities = 387/570 (68%), Gaps = 24/570 (4%) Strand=Plus/Plus Query 3 GACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCCAA 62 ||| ||| ||||||||||||||||| ||| ||| |||||||| |||||| || Sbjct 55114 GACATGTCCGTCTCGCAGTCAAGCTCTCTTATGCTTTTACACTCTATGGCTGATTTCCGT 55173 Query 63 CCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAGTT 122 |||| ||||| ||||||||| | ||||| |||| |||||||||| | | |||||||| Sbjct 55174 CCAGCCTGAGAGAACCTTTGTACACCTCCATTACCTTTTGGGAGGTGA-CTGCCCCAGTC 55232 Query 123 AAACTACCCACCAGGCACTGTCCCCAACCCAGATCATGGGCCAAGGTTAGATATCCAC-- 180 ||||| ||| || | |||||| || ||| | || || | || || | Sbjct 55233 AAACTGCCCGCCTGAAACTGTCTTTTTACCGGATAACGGTTAAAAATGAGCGCTCTAGCT 55292 Query 181 TACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCA-----TC 235 ||| |||||||||| ||| | |||||| | || | || | | || Sbjct 55293 TACCA--AGAGTGGTATCTCACTGATGACTCCCC-----CTTTCCCGGAAGAAAAGGTTC 55345 Query 236 ATAGTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAG 295 | |||||||||||| || | | || | | |||| ||| | || ||| ||| Sbjct 55346 AACGTCTCCCACCTAAGCTGCGCGAAATAAGCTTGAGAGCAATTCCAGGTTACAGTAAAG 55405 Query 296 GTCCCG-GGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTT 354 | | |||||||| |||| || | || ||||||| || || | |||| Sbjct 55406 CTTCATAGGGTCTTTCTGTCCGTGTGCAGGTAATCCGCATCTTCACAGATATTTTTATTT 55465 Query 355 CACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACT 414 ||||| | || | |||||||| | ||||||| || ||||||| |||||||||| Sbjct 55466 CACCGAGTCTCTCTCTGAGACAGTATCCAGATCGTTACACCTTTCGTGCGGGTCGGAACT 55525 Query 415 TACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGG 474 |||||||||||||||||||||||||||||| ||||||||||| |||||||| || || Sbjct 55526 TACCCGACAAGGAATTTCGCTACCTTAGGACAGTTATAGTTACTGCCGCCGTTCACCAGG 55585 Query 475 GCTTCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAG 534 |||||| || | || ||| || | || || | | || ||||||||| | Sbjct 55586 GCTTCAGTTGTCAGCTTCA-----TCCGAAGATTGACCA--ACTTCT-TTAACCTTCTGG 55637 Query 535 CACCGGGCAGGCGTCAGTCCGTATACCTCG 564 ||| ||||||| ||||| || |||| ||| Sbjct 55638 CACTGGGCAGGTGTCAGCCCCCATACTTCG 55667 >seq20 Length=43614 Score = 120 bits (132), Expect = 1e-24 Identities = 105/131 (80%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 349 CAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTC 408 ||||||||| | | | | | ||||||| ||| | |||||||||| ||| |||||||| Sbjct 13966 CAATTTCACTGAGTCCATACTGGAGACAGTGGGGCAATCGTTACGCCTTTCATGCAGGTC 14025 Query 409 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTT 468 | | ||| | ||||| |||||||||||| ||| ||| ||||||||||| |||||||||| Sbjct 14026 AGGAATTAGCTGACAATGAATTTCGCTACTTTATGATTGTTATAGTTACAACCGCCGTTT 14085 Query 469 ACTGGGGCTTC 479 ||| || |||| Sbjct 14086 ACTAGGCCTTC 14096 Score = 120 bits (132), Expect = 1e-24 Identities = 105/131 (80%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 349 CAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTC 408 ||||||||| | | | | | ||||||| ||| | |||||||||| ||| |||||||| Sbjct 41476 CAATTTCACTGAGTCCATACTGGAGACAGTGGGGCAATCGTTACGCCTTTCATGCAGGTC 41417 Query 409 GGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTT 468 | | ||| | ||||| |||||||||||| ||| ||| ||||||||||| |||||||||| Sbjct 41416 AGGAATTAGCTGACAATGAATTTCGCTACTTTATGATTGTTATAGTTACAACCGCCGTTT 41357 Query 469 ACTGGGGCTTC 479 ||| || |||| Sbjct 41356 ACTAGGCCTTC 41346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702399642496