Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bathycoccus_20sp._20TOSAG39-1_20[genbank_20GCA_5F900128745.1_202016- 12-02] 2,118 sequences; 10,057,911 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1970 111 6e-22 seq348 75.2 4e-11 seq16 75.2 4e-11 >seq1970 Length=539 Score = 111 bits (122), Expect = 6e-22 Identities = 126/169 (75%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 135 ACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTC 194 ||||| |||| ||| |||||| ||||||||||||||| | |||||||||||||||||| Sbjct 371 ACGCTTTACCTCAATAAATTTCGCGGAGAACCAGCTATCTCTAAGTTTGATTGGCCTTTC 430 Query 195 ACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCG 254 ||||||| || || ||||| | || |||| | || |||||| |||||| Sbjct 431 ACCCCTAGCCTCAACTCATCTGCGTCTATTGCAACAGACGTCAGTTCGGCCCTCCAAAAA 490 Query 255 GTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGG 303 | |||||| ||||| |||| || | |||||||||| | |||||| Sbjct 491 CTTTTACCCTTTCTTCAGCCTGGTCAAAGCTAGATCACTTAGTTTCGGG 539 >seq348 Length=7419 Score = 75.2 bits (82), Expect = 4e-11 Identities = 75/95 (79%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 472 TTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTACTT 530 ||||||||||| ||| |||| | || ||| ||||||| |||||||||||||||||| Sbjct 3366 TTTCAGGTACTTTTTAACTCTCTTTTCAAAGGT-CTTTTCATCTTTCCCTCACGGTACTT 3424 Query 531 GTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 || ||||||||||| | | ||||||| |||| Sbjct 3425 GTTCGCTATCGGTCTCTCGCCAATATTTAGCCTTA 3459 >seq16 Length=50947 Score = 75.2 bits (82), Expect = 4e-11 Identities = 75/95 (79%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 472 TTTCAGGTACTATTTCACTCCCCGC-CAGGGGTACTTTTCACCTTTCCCTCACGGTACTT 530 ||||||||||| ||| |||| | || ||| ||||||| |||||||||||||||||| Sbjct 3366 TTTCAGGTACTTTTTAACTCTCTTTTCAAAGGT-CTTTTCATCTTTCCCTCACGGTACTT 3424 Query 531 GTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 || ||||||||||| | | ||||||| |||| Sbjct 3425 GTTCGCTATCGGTCTCTCGCCAATATTTAGCCTTA 3459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817561503232