Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Botryococcus_20braunii_20[genbank_20GCA_5F002005505.1_202017-02-22] 2,751 sequences; 184,381,702 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq763 280 2e-73 seq141 280 2e-73 seq65 280 2e-73 seq40 280 2e-73 seq20 280 2e-73 seq831 275 9e-72 seq686 275 9e-72 seq1 271 1e-70 seq234 197 2e-48 seq1155 163 4e-38 seq735 161 1e-37 seq36 140 5e-31 >seq763 Length=21608 Score = 280 bits (310), Expect = 2e-73 Identities = 201/228 (88%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||| |||||| |||||||||||| ||| | Sbjct 12210 GTACAAAGGGCAGGGACGTAATCAACGCCTGCT-GATGACAGGCGCTTACTAGGCATT-C 12267 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||| || ||||||||| ||||| ||||||||||||| | |||| |||||| Sbjct 12268 CTCGTTGAAGATGAATAATTGCAATCATCTAGCCCCATCACGATGCAGTTTCCCAGATTA 12327 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||||||| |||| ||||| ||| ||||||| || |||||||||||||||||||||| Sbjct 12328 CCCGGACCTCTCGGTCAAGGC--TAGGCTCGTTGCATGCATCAGTGTAGCGCGCGTGCGG 12385 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 12386 CCCAGAACATCTAAGGGCATCACAGACCTGTTATCGCCTCACACTTCC 12433 >seq141 Length=398432 Score = 280 bits (310), Expect = 2e-73 Identities = 201/228 (88%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||| |||||| |||||||||||| ||| | Sbjct 389208 GTACAAAGGGCAGGGACGTAATCAACGCCTGCT-GATGACAGGCGCTTACTAGGCATT-C 389151 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||| || ||||||||| ||||| ||||||||||||| | |||| |||||| Sbjct 389150 CTCGTTGAAGATGAATAATTGCAATCATCTAGCCCCATCACGATGCAGTTTCCCAGATTA 389091 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||||||| |||| ||||| ||| ||||||| || |||||||||||||||||||||| Sbjct 389090 CCCGGACCTCTCGGTCAAGGC--TAGGCTCGTTGCATGCATCAGTGTAGCGCGCGTGCGG 389033 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 389032 CCCAGAACATCTAAGGGCATCACAGACCTGTTATCGCCTCACACTTCC 388985 >seq65 Length=559413 Score = 280 bits (310), Expect = 2e-73 Identities = 201/228 (88%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||| |||||| |||||||||||| ||| | Sbjct 117148 GTACAAAGGGCAGGGACGTAATCAACGCCTGCT-GATGACAGGCGCTTACTAGGCATT-C 117205 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||| || ||||||||| ||||| ||||||||||||| | |||| |||||| Sbjct 117206 CTCGTTGAAGATGAATAATTGCAATCATCTAGCCCCATCACGATGCAGTTTCCCAGATTA 117265 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||||||| |||| ||||| ||| ||||||| || |||||||||||||||||||||| Sbjct 117266 CCCGGACCTCTCGGTCAAGGC--TAGGCTCGTTGCATGCATCAGTGTAGCGCGCGTGCGG 117323 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 117324 CCCAGAACATCTAAGGGCATCACAGACCTGTTATCGCCTCACACTTCC 117371 >seq40 Length=674714 Score = 280 bits (310), Expect = 2e-73 Identities = 201/228 (88%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||| |||||| |||||||||||| ||| | Sbjct 177323 GTACAAAGGGCAGGGACGTAATCAACGCCTGCT-GATGACAGGCGCTTACTAGGCATT-C 177380 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||| || ||||||||| ||||| ||||||||||||| | |||| |||||| Sbjct 177381 CTCGTTGAAGATGAATAATTGCAATCATCTAGCCCCATCACGATGCAGTTTCCCAGATTA 177440 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||||||| |||| ||||| ||| ||||||| || |||||||||||||||||||||| Sbjct 177441 CCCGGACCTCTCGGTCAAGGC--TAGGCTCGTTGCATGCATCAGTGTAGCGCGCGTGCGG 177498 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 177499 CCCAGAACATCTAAGGGCATCACAGACCTGTTATCGCCTCACACTTCC 177546 >seq20 Length=848245 Score = 280 bits (310), Expect = 2e-73 Identities = 201/228 (88%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||| |||||| |||||||||||| ||| | Sbjct 383702 GTACAAAGGGCAGGGACGTAATCAACGCCTGCT-GATGACAGGCGCTTACTAGGCATT-C 383645 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||| || ||||||||| ||||| ||||||||||||| | |||| |||||| Sbjct 383644 CTCGTTGAAGATGAATAATTGCAATCATCTAGCCCCATCACGATGCAGTTTCCCAGATTA 383585 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||||||| |||| ||||| ||| ||||||| || |||||||||||||||||||||| Sbjct 383584 CCCGGACCTCTCGGTCAAGGC--TAGGCTCGTTGCATGCATCAGTGTAGCGCGCGTGCGG 383527 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 383526 CCCAGAACATCTAAGGGCATCACAGACCTGTTATCGCCTCACACTTCC 383479 >seq831 Length=15331 Score = 275 bits (304), Expect = 9e-72 Identities = 200/228 (88%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||| |||||| |||||||||||| ||| | Sbjct 15121 GTACAAAGGGCAGGGACGTAATCAACGCCTGCT-GATGACAGGCGCTTACTAGGCATT-C 15064 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||| || ||||||||| ||||| ||||||||||||| | |||| |||||| Sbjct 15063 CTCGTTGAAGATGAATAATTGCAATCATCTAGCCCCATCACGATGCAGTTTCCCAGATTA 15004 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||||||| |||| ||||| ||| |||| || || |||||||||||||||||||||| Sbjct 15003 CCCGGACCTCTCGGTCAAGGC--TAGGCTCGGTGCATGCATCAGTGTAGCGCGCGTGCGG 14946 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 14945 CCCAGAACATCTAAGGGCATCACAGACCTGTTATCGCCTCACACTTCC 14898 >seq686 Length=35560 Score = 275 bits (304), Expect = 9e-72 Identities = 200/228 (88%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||| |||||| |||||||||||| ||| | Sbjct 7321 GTACAAAGGGCAGGGACGTAATCAACGCCTGCT-GATGACAGGCGCTTACTAGGCATT-C 7378 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||| || ||||||||| ||||| ||||||||||||| | |||| |||||| Sbjct 7379 CTCGTTGAAGATGAATAATTGCAATCATCTAGCCCCATCACGATGCAGTTTCCCAGATTA 7438 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||||||| |||| ||||| ||| |||| || || |||||||||||||||||||||| Sbjct 7439 CCCGGACCTCTCGGTCAAGGC--TAGGCTCGGTGCATGCATCAGTGTAGCGCGCGTGCGG 7496 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 7497 CCCAGAACATCTAAGGGCATCACAGACCTGTTATCGCCTCACACTTCC 7544 >seq1 Length=1870169 Score = 271 bits (300), Expect = 1e-70 Identities = 199/228 (87%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||| |||||| |||||||||||| ||| | Sbjct 39404 GTACAAAGGGCAGGGACGTAATCAACGCCTGCT-GATGACAGGCGCTTACTAGGCATT-C 39347 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||| || ||||||||| |||| ||||||||||||| | |||| ||||| Sbjct 39346 CTCGTTGAAGATGAATAATTGCAATCATCTGGCCCCATCACGATGCAGTTTCCCTGATTA 39287 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||||||| |||| ||||| ||| |||||||||| |||||||||||||||||||||| Sbjct 39286 CCCGGACCTCTCGGTCAAGGC--TAGGCTCGTTGAATGCATCAGTGTAGCGCGCGTGCGG 39229 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||||| |||||||||||||||||||||| |||||| |||||| Sbjct 39228 CCCAGAACATCAAAGGGCATCACAGACCTGTTATCGCCTCACACTTCC 39181 Score = 257 bits (284), Expect = 3e-66 Identities = 196/228 (86%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| ||| |||||| |||||||||||| ||| | Sbjct 795391 GTACAAAGGGCAGGGACGTAATCAACGCCTGCT-GATGACAGGCGCTTACTAGGCATT-C 795334 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||| || ||||||||| | || ||||||||||||| | |||| |||||| Sbjct 795333 CTCGTTGAAGATGAATAATTGCAATCACTTAGCCCCATCACGATGCAGTTTCCTAGATTA 795274 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 |||||| || |||| ||||| | | ||||||| || |||||||||||||||||||||| Sbjct 795273 CCCGGAGCTCTCGGTCAAGGC--TGGGCTCGTTGCATGCATCAGTGTAGCGCGCGTGCGG 795216 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||| |||||| || ||| Sbjct 795215 CCCAGAACATCTAAGGGCATCACAGACCTGTTATCGCCTCACACCTCC 795168 >seq234 Length=270149 Score = 197 bits (218), Expect = 2e-48 Identities = 188/236 (80%), Gaps = 16/236 (7%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||| |||||| | || || ||| |||||| |||||||||||| ||| | Sbjct 32670 GTACAAAGGGCAGAGACGTAATTAAAGCCTGCT-GATGACAGGCGCTTACTAGGCATT-C 32727 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||| | ||||| | ||| ||||||||||||| | |||| |||||| Sbjct 32728 CTCGTTGAAGATGGATAATTGAAG----CTAGCCCCATCACGATGCAGTTTCCCAGATTA 32783 Query 121 CCCGGAC-------CTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCG 173 ||| ||| || |||| ||||| ||| ||||||| || ||||||||||||||| Sbjct 32784 CCCAGACGGTCGACCTTTCGGTCAAGGC--TAGGCTCGTTGCATGCATCAGTGTAGCGCG 32841 Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTT-ATTGCCTCAAACTTCC 228 |||||| |||| || |||||||||||||||||||||||| || |||||| |||||| Sbjct 32842 CGTGCGACCCAAAATATCTAAGGGCATCACAGACCTGTTGATCGCCTCACACTTCC 32897 >seq1155 Length=6983 Score = 163 bits (180), Expect = 4e-38 Identities = 184/228 (81%), Gaps = 20/228 (9%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||| ||||| ||||||| ||| |||||| ||| |||||||| ||| | Sbjct 2221 GTACAAAGGGCAGG-ACGTAATCAACGCCTGCT-GATGACAGGCG-TTACTAGGCATT-C 2276 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||| ||| | ||||||||| ||||| ||||||||||||| | || | |||| Sbjct 2277 CTCGTG--AGATGAT-AATTGCAATCATCTAGCCCCATCACGATGCATTTCCC--GATT- 2330 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| ||| |||| || | ||| ||||||| || |||||||||||||||||||||| Sbjct 2331 CCCGG-CCTCTCGGTCAGG----TAGGCTCGTTGCATGCATCAGTGTAGCGCGCGTGCGG 2385 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||| ||||||| ||| ||| |||||| |||||| |||||| Sbjct 2386 CCCAGAACAT-TAAGGGC-TCA-AGA-CTGTTA-CGCCTCACACTTCC 2428 >seq735 Length=27027 Score = 161 bits (178), Expect = 1e-37 Identities = 185/228 (81%), Gaps = 23/228 (10%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||| |||||| |||||||| ||| ||| Sbjct 26696 GTACAAAGGGCAGGGACGTAATCA-CGCT-GCT-GATGACAGGCGCTTAC-AGGCATT-- 26643 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||||||||||| || | |||||| |||| ||| ||||||||| | || || ||||| Sbjct 26642 CTCGTTGAAGAG-AATA--TGCAATC-TCTAGCCC-ATCACGATGCAGTTCCA--GATTA 26590 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 || |||| | |||| |||| ||| ||||| | || |||| || |||||||||||| Sbjct 26589 CC-GGAC-TCTCGGT-AAGGC--TAGGCTCGT-GCATGCATC---GT-GCGCGCGTGCGG 26540 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 26539 CCCAGAACATCTAAGGGCATCACAGACCTGTTATCGCCTCACACTTCC 26492 >seq36 Length=699212 Score = 140 bits (154), Expect = 5e-31 Identities = 151/199 (76%), Gaps = 16/199 (8%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATT-- 58 |||||||||||||||||||| ||| ||| ||| |||||| || |||| || |||| Sbjct 349177 GTACAAAGGGCAGGGACGTAATCAGCGCCTGCT-GATGACAGGCCCTTATAAGTAATTAC 349119 Query 59 -------TCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT 111 |||||| |||||| || ||||||||| ||||| ||||||||||||| | ||| Sbjct 349118 TAAGTATTCCTCGCTGAAGATGAATAATTGCAATCATCTAGCCCCATCACGATGCAGTTT 349059 Query 112 CAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCG 171 | ||| ||| ||||||| ||| |||| | ||| ||||||| || ||||||| Sbjct 349058 CCCAGAATACACGGACCTCTCGTTCAAG--GCTAGGCTCGTTG----CAAAGCTGTAGCG 349005 Query 172 CGCGTGCGGCCCAGAACAT 190 |||||||||||| |||||| Sbjct 349004 CGCGTGCGGCCCGGAACAT 348986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751979958965